Anchorpoints

Gene id
GR10G00680
Organism
Gossypium raimondii

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
GR03G01180No description available.Chr03-View
GR05G11060No description available.Chr05-View
GR02G12560No description available.Chr02+View
GR13G03350No description available.Chr13+View
GR05G24710No description available.Chr05-View
GR09G19730No description available.Chr09+View
GR07G19810No description available.Chr07-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G04500No description available.scaffold_7+View
AL1G20790No description available.scaffold_1-View
AL8G34310No description available.scaffold_8+View
AL5G20700No description available.scaffold_5+View
AL3G39110No description available.scaffold_3-View
AL4G00590No description available.scaffold_4+View
AL2G24460No description available.scaffold_2-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G21400SHI-related sequence3 (SRS3); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 181 Blast hits to 177 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence3 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.2+View
AT1G19790A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence 71-View
AT5G66350SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid. Lateral root primordium (LRP) protein-related5-View
AT4G36260Lateral root primordium (LRP) protein-related A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves. STYLISH 2 (STY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, style development, auxin homeostasis, negative regulation of gibberellic acid mediated signaling pathway, stigma development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 4 (TAIR:AT2G18120.1); Has 2502 Blast hits to 2002 proteins in 224 species: Archae - 2; Bacteria - 961; Metazoa - 458; Fungi - 79; Plants - 348; Viruses - 38; Other Eukaryotes - 616 (source: NCBI BLink).4-View
AT1G75520SHI-related sequence 5 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).1-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR01G21730No description available.A01-View
BR06G14250No description available.A06-View
BR04G11910No description available.A04+View
BR07G30810No description available.A07-View
BR02G23220No description available.A02-View
BR03G55170No description available.A03-View
BR07G19900No description available.A07+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G08260No description available.Bvchr1.sca001+View
BV6G16420No description available.Bvchr6.sca002-View
BV9G12890No description available.Bvchr9.sca026+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL08G14340No description available.Chr8+View
CL01G20160No description available.Chr1-View
CL05G19720No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G03440No description available.CM3.5_scaffold00014-View
CM00007G09120No description available.CM3.5_scaffold00007-View
CM01596G05020No description available.CM3.5_scaffold01596+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00006G01910No description available.supercontig_6+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G03710No description available.scaffold_7+View
CRU_004G00460No description available.scaffold_4+View
CRU_001G18500No description available.scaffold_1-View
CRU_002G21110No description available.scaffold_2-View
CRU_008G27320No description available.scaffold_8+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G04980No description available.scaffold00002-View
CS00237G00200No description available.scaffold00237-View
CS00017G00530No description available.scaffold00017+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G13080No description available.scaffold_6-View
EG0009G20080No description available.scaffold_9+View
EG0009G10480No description available.scaffold_9-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM14G40660No description available.Gm14+View
GM02G05830No description available.Gm02-View
GM06G01160No description available.Gm06+View
GM17G37410No description available.Gm17-View
GM04G03000No description available.Gm04+View
GM16G24510No description available.Gm16-View
GM06G03030No description available.Gm06+View
GM01G37590No description available.Gm01-View
GM11G12101No description available.Gm11+View
GM12G04310No description available.Gm12+View
GM11G07710No description available.Gm11+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G029970No description available.chr1-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD02G012020No description available.2-View
MD12G015230No description available.12-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06512G00680No description available.scaffold06512+View
ME09657G00180No description available.scaffold09657-View
ME07012G00680No description available.scaffold07012+View
ME07520G02230No description available.scaffold07520+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G076620zinc finger C LRP1 type proteinchr8+View
MT1G023230zinc finger C LRP1 type proteinchr1-View
MT3G112510transcription factor C putativechr3-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS06G49830SHI, putative, expressed6+View
OS01G72490LRP1, putative, expressed1-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G37970No description available.scaffold_1-View
PPE_008G10610No description available.scaffold_8+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G16060No description available.Chr04-View
PT05G23420No description available.Chr05-View
PT05G11820No description available.Chr05-View
PT09G12160No description available.Chr09-View
PT02G02850No description available.Chr02+View
PT07G01750No description available.Chr07-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G04790No description available.30170-View
RC30131G02490No description available.30131-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G062400Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch02+View
SL01G110140Stylish (AHRD V1 **-- D2KC71_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch01-View
SL04G080970Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch04-View
SL03G033680Short internode related sequence 5 (AHRD V1 -*-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G010050Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr02+View
ST03G009380Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR006510 Zinc finger, Lateral Root Primordium type 1chr03+View
ST04G034360Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr04-View
ST02G027800Short internode related sequence 7 (AHRD V1 **-- D2KC77_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr02+View
ST01G047570Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr01-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G07470No description available.scaffold_2+View
TC0008G03510No description available.scaffold_8-View
TC0001G02360No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G17600similar to AT1G19790|SRS7 (SHI-RELATED SEQUENCE 7)ch1-1-View
TP5G30650similar to AT1G75520|SRS5 (SHI-RELATED SEQUENCE 5)ch5-7-View
TP4G00580similar to AT2G21400|SRS3 (SHI-RELATED SEQUENCE3)ch4-1+View
TP3G31560similar to AT2G18120|SRS4 (SHI-RELATED SEQUENCE 4)ch3-6-View
TP7G34000similar to AT4G36260|STY2 (STYLISH 2)ch7-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G01250name=GSVIVG01018845001;chr4-View
VV18G09810name=GSVIVG01009812001;chr18-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G15490No description available.5+View
ZM06G10300No description available.6-View
ZM04G34960SHI4-View


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Gene id
Species
Description
Chromosome
Strand