Anchorpoints
- Gene id
- GR09G23310
- Organism
- Gossypium raimondii
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR05G09510 | No description available. | Chr05 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL7G02360 | No description available. | scaffold_7 | + | View |
AL1G24100 | No description available. | scaffold_1 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G22500 | RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink). | 1 | + | View |
AT4G40070 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 9770 Blast hits to 9744 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2524; Fungi - 782; Plants - 4953; Viruses - 74; Other Eukaryotes - 1437 (source: NCBI BLink). | 4 | + | View |
AT5G10380 | Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. RING/U-box superfamily protein RING1; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | 5 | + | View |
AT4G09100 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 2331; Fungi - 762; Plants - 4890; Viruses - 29; Other Eukaryotes - 1232 (source: NCBI BLink). RING/U-box superfamily protein | 4 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR03G25210 | No description available. | A03 | + | View |
BR03G17740 | No description available. | A03 | - | View |
BR10G23030 | No description available. | A10 | - | View |
BR09G17020 | No description available. | A09 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV6G05270 | No description available. | Bvchr6.sca005 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL01G18810 | No description available. | Chr1 | - | View |
CL08G11060 | No description available. | Chr8 | + | View |
CL11G08550 | No description available. | Chr11 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM01596G02590 | No description available. | CM3.5_scaffold01596 | - | View |
CM00014G04150 | No description available. | CM3.5_scaffold00014 | + | View |
CM00007G07610 | No description available. | CM3.5_scaffold00007 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00055G00570 | No description available. | supercontig_55 | - | View |
CP00036G01860 | No description available. | supercontig_36 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G21100 | No description available. | scaffold_1 | + | View |
CRU_001G31370 | No description available. | scaffold_1 | + | View |
CRU_006G26720 | No description available. | scaffold_6 | + | View |
CRU_007G01940 | No description available. | scaffold_7 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00004G02510 | No description available. | scaffold00004 | + | View |
CS00059G00540 | No description available. | scaffold00059 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G04350 | No description available. | scaffold_9 | + | View |
EG0006G03310 | No description available. | scaffold_6 | + | View |
EG0002G00370 | No description available. | scaffold_2 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G21960 | Probable RING-H2 finger protein ATL5G | scf0513168 | - | View |
FV1G24630 | RING-H2 finger protein ATL5H, Precursor (probable) | LG1 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM02G37296 | No description available. | Gm02 | + | View |
GM15G06150 | No description available. | Gm15 | + | View |
GM14G35550 | No description available. | Gm14 | + | View |
GM04G10610 | No description available. | Gm04 | - | View |
GM18G01791 | No description available. | Gm18 | - | View |
GM06G10460 | No description available. | Gm06 | - | View |
GM05G30920 | No description available. | Gm05 | - | View |
GM08G07470 | No description available. | Gm08 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME03735G00450 | No description available. | scaffold03735 | - | View |
ME08261G00070 | No description available. | scaffold08261 | - | View |
ME09151G00730 | No description available. | scaffold09151 | + | View |
ME08265G01330 | No description available. | scaffold08265 | + | View |
ME06916G02150 | No description available. | scaffold06916 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT3G086680 | RING finger protein | chr3 | - | View |
MT3G099650 | RING-H2 zinc finger protein C putative | chr3 | + | View |
MT8G089880 | zinc finger C C3HC4 type (RING finger) protein | chr8 | - | View |
MT4G093830 | RING-H2 zinc finger protein | chr4 | - | View |
MT5G064890 | RING-H2 zinc finger protein | chr5 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS03G08920 | Zinc finger, C3HC4 type domain containing protein, expressed E3 ubiquitin-protein ligase Os03g0188200 | 3 | - | View |
OS08G37760 | zinc finger, C3HC4 type domain containing protein, expressed | 8 | + | View |
OS06G11450 | zinc finger, C3HC4 type domain containing protein, expressed | 6 | - | View |
OS03G27360 | RING-H2 finger protein ATL5H precursor, putative, expressed | 3 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_006G20110 | No description available. | scaffold_6 | + | View |
PPE_001G59040 | No description available. | scaffold_1 | - | View |
PPE_008G08010 | No description available. | scaffold_8 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT05G07130 | No description available. | Chr05 | - | View |
PT05G16090 | No description available. | Chr05 | - | View |
PT17G04930 | No description available. | Chr17 | - | View |
PT07G09750 | No description available. | Chr07 | + | View |
PT02G10180 | No description available. | Chr02 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29838G00070 | No description available. | 29838 | + | View |
RC29908G02440 | No description available. | 29908 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL04G074790 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch04 | + | View |
SL11G010330 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch11 | + | View |
SL01G105610 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch01 | + | View |
SL04G014220 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch04 | + | View |
SL12G087840 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch12 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST11G009370 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr11 | - | View |
ST04G029880 | Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr04 | - | View |
ST01G042760 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr01 | + | View |
ST12G025880 | Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr12 | + | View |
ST04G028570 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr04 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G09010 | No description available. | scaffold_1 | - | View |
TC0008G09720 | No description available. | scaffold_8 | - | View |
TC0002G12760 | No description available. | scaffold_2 | - | View |
TC0008G06210 | No description available. | scaffold_8 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G30080 | similar to AT1G35330|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | + | View |
TP6G08420 | similar to AT4G09130|zinc finger (C3HC4-type RING finger) family protein | ch6-3 | - | View |
TP1G19980 | similar to AT1G22500|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | + | View |
TP7G35780 | similar to AT4G40070|protein binding / zinc ion binding | ch7-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G04050 | name=GSVIVG01009096001; | chr18 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM02G13760 | No description available. | 2 | + | View |
ZM01G06160 | No description available. | 1 | - | View |
ZM09G27130 | No description available. | 9 | + | View |
ZM07G16760 | No description available. | 7 | - | View |
ZM01G30990 | No description available. | 1 | + | View |
ZM04G27300 | No description available. | 4 | - | View |
ZM01G17310 | No description available. | 1 | + | View |