Anchorpoints

Gene id
GR09G23310
Organism
Gossypium raimondii

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
GR05G09510No description available.Chr05+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G02360No description available.scaffold_7+View
AL1G24100No description available.scaffold_1+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G22500RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink).1+View
AT4G40070RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 9770 Blast hits to 9744 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2524; Fungi - 782; Plants - 4953; Viruses - 74; Other Eukaryotes - 1437 (source: NCBI BLink).4+View
AT5G10380Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. RING/U-box superfamily protein RING1; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View
AT4G09100RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 2331; Fungi - 762; Plants - 4890; Viruses - 29; Other Eukaryotes - 1232 (source: NCBI BLink). RING/U-box superfamily protein4+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G25210No description available.A03+View
BR03G17740No description available.A03-View
BR10G23030No description available.A10-View
BR09G17020No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G05270No description available.Bvchr6.sca005+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G18810No description available.Chr1-View
CL08G11060No description available.Chr8+View
CL11G08550No description available.Chr11+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM01596G02590No description available.CM3.5_scaffold01596-View
CM00014G04150No description available.CM3.5_scaffold00014+View
CM00007G07610No description available.CM3.5_scaffold00007-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00055G00570No description available.supercontig_55-View
CP00036G01860No description available.supercontig_36+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G21100No description available.scaffold_1+View
CRU_001G31370No description available.scaffold_1+View
CRU_006G26720No description available.scaffold_6+View
CRU_007G01940No description available.scaffold_7+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00004G02510No description available.scaffold00004+View
CS00059G00540No description available.scaffold00059-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G04350No description available.scaffold_9+View
EG0006G03310No description available.scaffold_6+View
EG0002G00370No description available.scaffold_2+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G21960Probable RING-H2 finger protein ATL5Gscf0513168-View
FV1G24630RING-H2 finger protein ATL5H, Precursor (probable)LG1+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G37296No description available.Gm02+View
GM15G06150No description available.Gm15+View
GM14G35550No description available.Gm14+View
GM04G10610No description available.Gm04-View
GM18G01791No description available.Gm18-View
GM06G10460No description available.Gm06-View
GM05G30920No description available.Gm05-View
GM08G07470No description available.Gm08-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03735G00450No description available.scaffold03735-View
ME08261G00070No description available.scaffold08261-View
ME09151G00730No description available.scaffold09151+View
ME08265G01330No description available.scaffold08265+View
ME06916G02150No description available.scaffold06916-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G086680RING finger proteinchr3-View
MT3G099650RING-H2 zinc finger protein C putativechr3+View
MT8G089880zinc finger C C3HC4 type (RING finger) proteinchr8-View
MT4G093830RING-H2 zinc finger proteinchr4-View
MT5G064890RING-H2 zinc finger proteinchr5+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G08920Zinc finger, C3HC4 type domain containing protein, expressed E3 ubiquitin-protein ligase Os03g01882003-View
OS08G37760zinc finger, C3HC4 type domain containing protein, expressed8+View
OS06G11450zinc finger, C3HC4 type domain containing protein, expressed6-View
OS03G27360RING-H2 finger protein ATL5H precursor, putative, expressed3+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G20110No description available.scaffold_6+View
PPE_001G59040No description available.scaffold_1-View
PPE_008G08010No description available.scaffold_8-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G07130No description available.Chr05-View
PT05G16090No description available.Chr05-View
PT17G04930No description available.Chr17-View
PT07G09750No description available.Chr07+View
PT02G10180No description available.Chr02+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29838G00070No description available.29838+View
RC29908G02440No description available.29908+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G074790RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech04+View
SL11G010330RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech11+View
SL01G105610RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech01+View
SL04G014220RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech04+View
SL12G087840RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech12+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G009370RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr11-View
ST04G029880Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04-View
ST01G042760RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr01+View
ST12G025880Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr12+View
ST04G028570RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G09010No description available.scaffold_1-View
TC0008G09720No description available.scaffold_8-View
TC0002G12760No description available.scaffold_2-View
TC0008G06210No description available.scaffold_8+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G30080similar to AT1G35330|zinc finger (C3HC4-type RING finger) family proteinch1-1+View
TP6G08420similar to AT4G09130|zinc finger (C3HC4-type RING finger) family proteinch6-3-View
TP1G19980similar to AT1G22500|zinc finger (C3HC4-type RING finger) family proteinch1-1+View
TP7G35780similar to AT4G40070|protein binding / zinc ion bindingch7-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G04050name=GSVIVG01009096001;chr18+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM02G13760No description available.2+View
ZM01G06160No description available.1-View
ZM09G27130No description available.9+View
ZM07G16760No description available.7-View
ZM01G30990No description available.1+View
ZM04G27300No description available.4-View
ZM01G17310No description available.1+View


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Gene id
Species
Description
Chromosome
Strand