Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- GR09G21490
- Organism
- Gossypium raimondii
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR08G07830 | No description available. | Chr08 | + | View |
| GR07G05540 | No description available. | Chr07 | + | View |
| GR07G21690 | No description available. | Chr07 | + | View |
| GR05G23590 | No description available. | Chr05 | - | View |
| GR02G13380 | No description available. | Chr02 | - | View |
| GR10G02270 | No description available. | Chr10 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL7G03460 | No description available. | scaffold_7 | - | View |
| AL1G40280 | No description available. | scaffold_1 | - | View |
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT5G43060 | Granulin repeat cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT1G47128.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Granulin repeat cysteine protease family protein | 5 | - | View |
| AT3G19390 | Granulin repeat cysteine protease family protein Granulin repeat cysteine protease family protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 9061 Blast hits to 8168 proteins in 770 species: Archae - 67; Bacteria - 297; Metazoa - 4335; Fungi - 6; Plants - 1937; Viruses - 140; Other Eukaryotes - 2279 (source: NCBI BLink). | 3 | + | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR05G24220 | No description available. | A05 | - | View |
| BR06G38900 | No description available. | A06 | + | View |
Beta vulgaris
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BV6G22750 | No description available. | Bvchr6.sca001 | + | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL01G17270 | No description available. | Chr1 | + | View |
| CL02G06320 | No description available. | Chr2 | + | View |
| CL05G21340 | No description available. | Chr5 | + | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM00007G06060 | No description available. | CM3.5_scaffold00007 | + | View |
| CM00034G00780 | No description available. | CM3.5_scaffold00034 | + | View |
| CM00029G01560 | No description available. | CM3.5_scaffold00029 | + | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00021G01550 | No description available. | supercontig_21 | - | View |
| CP00055G00990 | No description available. | supercontig_55 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_001G34130 | No description available. | scaffold_1 | - | View |
Citrus sinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CS00002G02580 | No description available. | scaffold00002 | - | View |
| CS00006G01700 | No description available. | scaffold00006 | - | View |
| CS00065G00520 | No description available. | scaffold00065 | + | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| EG0006G01590 | No description available. | scaffold_6 | - | View |
| EG0008G17880 | No description available. | scaffold_8 | + | View |
| EG0006G18920 | No description available. | scaffold_6 | - | View |
| EG0009G06640 | No description available. | scaffold_9 | - | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV1G17740 | Cysteine proteinase RD21a (RD21), Precursor (similar to) | LG1 | - | View |
| FV2G33360 | Cysteine proteinase RD21a (RD21), Precursor (putative) | LG2 | - | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM06G04540 | No description available. | Gm06 | + | View |
| GM04G04400 | No description available. | Gm04 | + | View |
| GM17G35720 | No description available. | Gm17 | - | View |
| GM14G09420 | No description available. | Gm14 | + | View |
| GM17G18440 | No description available. | Gm17 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD02G015920 | No description available. | 2 | + | View |
| MD15G002550 | No description available. | 15 | - | View |
| MD15G022540 | No description available. | 15 | + | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME03484G00160 | No description available. | scaffold03484 | - | View |
| ME00492G00120 | No description available. | scaffold00492 | - | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT1G018840 | papain family cysteine protease | chr1 | - | View |
| MT1G025370 | cathepsin propeptide inhibitor domain protein | chr1 | + | View |
| MT4G094918 | papain family cysteine protease | chr4 | + | View |
| MT3G102220 | papain family cysteine protease | chr3 | + | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS04G55650 | oryzain alpha chain precursor, putative, expressed | 4 | - | View |
Prunus persica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PPE_008G15070 | No description available. | scaffold_8 | + | View |
| PPE_006G23950 | No description available. | scaffold_6 | - | View |
| PPE_001G43610 | No description available. | scaffold_1 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT05G14160 | No description available. | Chr05 | + | View |
| PT09G09810 | No description available. | Chr09 | - | View |
| PT01G30210 | No description available. | Chr01 | - | View |
| PT07G04760 | No description available. | Chr07 | + | View |
| PT14G02410 | No description available. | Chr14 | - | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC29970G00020 | No description available. | 29970 | + | View |
| RC29801G00680 | No description available. | 29801 | - | View |
| RC30170G01780 | No description available. | 30170 | - | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL01G107760 | Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA)%3B contains Interpro domain(s) IPR013128 Peptidase C1A%2C papain | ch01 | - | View |
| SL12G088670 | Low-temperature-induced cysteine proteinase Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA)%3B contains Interpro domain(s) IPR013128 Peptidase C1A%2C papain IPR000169 Peptidase%2C cysteine peptidase active site IPR000668 Peptidase C1A%2C papain C-terminal | ch12 | - | View |
| SL02G093040 | Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA)%3B contains Interpro domain(s) IPR013128 Peptidase C1A%2C papain | ch02 | - | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST01G044880 | Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain | chr01 | - | View |
| ST12G026780 | Cathepsin B-like cysteine proteinase 2 (AHRD V1 *--- CYSP2_HAECO); contains Interpro domain(s) IPR013128 Peptidase C1A, papain | chr12 | - | View |
| ST02G031520 | Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain | chr02 | - | View |
| ST04G031490 | Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain | chr04 | - | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0002G10150 | No description available. | scaffold_2 | + | View |
| TC0008G00180 | No description available. | scaffold_8 | - | View |
| TC0001G05940 | No description available. | scaffold_1 | + | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP7G34890 | similar to AT4G36880|CP1 (CYSTEINE PROTEINASE1) | ch7-6 | + | View |
| TP3G17450 | similar to AT3G19390|cysteine proteinase, putative / thiol protease, putative | ch3-1 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV03G00690 | name=GSVIVG01003179001; | chr3 | + | View |
| VV18G06730 | name=GSVIVG01009440001; | chr18 | - | View |
| VV07G04990 | name=GSVIVG01022063001; | chr7 | - | View |
Zea mays
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ZM05G04140 | cysteine protease 1 | 5 | - | View |
| ZM07G26190 | No description available. | 7 | - | View |