Anchorpoints

Gene id
GR09G15520
Organism
Gossypium raimondii

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
GR11G04350No description available.Chr11+View
GR02G04240No description available.Chr02-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G24500No description available.scaffold_7-View
AL8G02040No description available.scaffold_8+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G46240potassium channel in Arabidopsis thaliana 1 (KAT1); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710), Protein of unknown function DUF3354 (InterPro:IPR021789); BEST Arabidopsis thaliana protein match is: potassium channel in Arabidopsis thaliana 2 (TAIR:AT4G18290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). potassium channel in Arabidopsis thaliana 1 Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5?0.6 μm diameter microdomains at the plasma membrane surface. KAT1 belongs to the Shaker family K+ channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).5-View
AT4G18290potassium channel in Arabidopsis thaliana 2 potassium channel in Arabidopsis thaliana 2 (KAT2); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: response to high light intensity, circadian rhythm, stomatal movement; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710), Protein of unknown function DUF3354 (InterPro:IPR021789); BEST Arabidopsis thaliana protein match is: potassium channel in Arabidopsis thaliana 1 (TAIR:AT5G46240.1); Has 5076 Blast hits to 4706 proteins in 358 species: Archae - 8; Bacteria - 372; Metazoa - 1790; Fungi - 37; Plants - 1121; Viruses - 0; Other Eukaryotes - 1748 (source: NCBI BLink). Encodes KAT2, a member of the Shaker family potassium ion (K+) channel. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).4+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00141G00400No description available.scaffold00141+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G37040No description available.A06+View
BR01G09410No description available.A01+View
BR08G11340No description available.A08+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL03G06810No description available.Chr3-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00001G08410No description available.CM3.5_scaffold00001+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G21920No description available.scaffold_7-View
CRU_008G01610No description available.scaffold_8+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00007G02440No description available.scaffold00007+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G18510No description available.scaffold_5-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G05170Potassium channel KAT1 (putative)LG3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM13G28901No description available.Gm13+View
GM15G10140No description available.Gm15-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD10G020900No description available.10-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G019530inwardly rectifying potassium channel subunitchr2-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_004G07630No description available.scaffold_4+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G13220No description available.Chr04+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29693G00570No description available.29693+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G070530Potassium channel (AHRD V1 ***- O24382_SOLTU)%3B contains Interpro domain(s) IPR000595 Cyclic nucleotide-bindingch02-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G016910Potassium channel (AHRD V1 ***- O24382_SOLTU); contains Interpro domain(s) IPR000595 Cyclic nucleotide-bindingchr02-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0006G14900No description available.scaffold_6-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G11110similar to AT5G46240|KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)ch2-4-View
TP7G15770similar to AT4G18290|KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)ch7-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV10G03990name=GSVIVG01021445001;chr10+View


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