Anchorpoints

Gene id
GM17G37410
Organism
Glycine max

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
GM14G40660No description available.Gm14+View
GM04G03000No description available.Gm04+View
GM06G03030No description available.Gm06+View
GM11G12101No description available.Gm11+View
GM12G04310No description available.Gm12+View
GM11G07710No description available.Gm11+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G04500No description available.scaffold_7+View
AL1G20790No description available.scaffold_1-View
AL4G00590No description available.scaffold_4+View
AL2G24460No description available.scaffold_2-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G21400SHI-related sequence3 (SRS3); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 181 Blast hits to 177 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence3 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.2+View
AT1G19790A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence 71-View
AT1G75520SHI-related sequence 5 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).1-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G14250No description available.A06-View
BR07G30810No description available.A07-View
BR02G23220No description available.A02-View
BR07G19900No description available.A07+View
BR01G02270No description available.A01+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G08260No description available.Bvchr1.sca001+View
BV6G16420No description available.Bvchr6.sca002-View
BV9G12890No description available.Bvchr9.sca026+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL08G14340No description available.Chr8+View
CL01G20160No description available.Chr1-View
CL05G19720No description available.Chr5+View
CL07G10200No description available.Chr7-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G03440No description available.CM3.5_scaffold00014-View
CM00007G09120No description available.CM3.5_scaffold00007-View
CM01596G05020No description available.CM3.5_scaffold01596+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00006G01910No description available.supercontig_6+View
CP00140G00130No description available.supercontig_140+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G00460No description available.scaffold_4+View
CRU_001G18500No description available.scaffold_1-View
CRU_002G21110No description available.scaffold_2-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G04980No description available.scaffold00002-View
CS00017G00530No description available.scaffold00017+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G13080No description available.scaffold_6-View
EG0009G20080No description available.scaffold_9+View
EG0009G10480No description available.scaffold_9-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G01180No description available.Chr03-View
GR05G11060No description available.Chr05-View
GR02G12560No description available.Chr02+View
GR10G00680No description available.Chr10+View
GR05G24710No description available.Chr05-View
GR09G19730No description available.Chr09+View
GR07G19810No description available.Chr07-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G029970No description available.chr1-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD12G015230No description available.12-View
MD15G018120No description available.15+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06512G00680No description available.scaffold06512+View
ME09657G00180No description available.scaffold09657-View
ME07012G00680No description available.scaffold07012+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G023230zinc finger C LRP1 type proteinchr1-View
MT4G071110zinc finger C LRP1 type proteinchr4-View
MT3G112510transcription factor C putativechr3-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G37970No description available.scaffold_1-View
PPE_007G18440No description available.scaffold_7-View
PPE_008G10610No description available.scaffold_8+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G16060No description available.Chr04-View
PT05G23420No description available.Chr05-View
PT09G12160No description available.Chr09-View
PT02G02850No description available.Chr02+View
PT07G01750No description available.Chr07-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G04790No description available.30170-View
RC30131G02490No description available.30131-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G110140Stylish (AHRD V1 **-- D2KC71_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch01-View
SL02G084680Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch02+View
SL04G080970Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch04-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G034360Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr04-View
ST02G027800Short internode related sequence 7 (AHRD V1 **-- D2KC77_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr02+View
ST01G047570Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr01-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G07470No description available.scaffold_2+View
TC0008G03510No description available.scaffold_8-View
TC0001G02360No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G17600similar to AT1G19790|SRS7 (SHI-RELATED SEQUENCE 7)ch1-1-View
TP5G30650similar to AT1G75520|SRS5 (SHI-RELATED SEQUENCE 5)ch5-7-View
TP4G00580similar to AT2G21400|SRS3 (SHI-RELATED SEQUENCE3)ch4-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G01250name=GSVIVG01018845001;chr4-View
VV18G09810name=GSVIVG01009812001;chr18-View
VV03G06180name=GSVIVG01024206001;chr3-View


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Gene id
Species
Description
Chromosome
Strand