Anchorpoints
- Gene id
- GM17G37410
- Organism
- Glycine max
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM14G40660 | No description available. | Gm14 | + | View |
GM04G03000 | No description available. | Gm04 | + | View |
GM06G03030 | No description available. | Gm06 | + | View |
GM11G12101 | No description available. | Gm11 | + | View |
GM12G04310 | No description available. | Gm12 | + | View |
GM11G07710 | No description available. | Gm11 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL7G04500 | No description available. | scaffold_7 | + | View |
AL1G20790 | No description available. | scaffold_1 | - | View |
AL4G00590 | No description available. | scaffold_4 | + | View |
AL2G24460 | No description available. | scaffold_2 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G21400 | SHI-related sequence3 (SRS3); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 181 Blast hits to 177 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence3 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. | 2 | + | View |
AT1G19790 | A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence 7 | 1 | - | View |
AT1G75520 | SHI-related sequence 5 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). | 1 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR06G14250 | No description available. | A06 | - | View |
BR07G30810 | No description available. | A07 | - | View |
BR02G23220 | No description available. | A02 | - | View |
BR07G19900 | No description available. | A07 | + | View |
BR01G02270 | No description available. | A01 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV1G08260 | No description available. | Bvchr1.sca001 | + | View |
BV6G16420 | No description available. | Bvchr6.sca002 | - | View |
BV9G12890 | No description available. | Bvchr9.sca026 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL08G14340 | No description available. | Chr8 | + | View |
CL01G20160 | No description available. | Chr1 | - | View |
CL05G19720 | No description available. | Chr5 | + | View |
CL07G10200 | No description available. | Chr7 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00014G03440 | No description available. | CM3.5_scaffold00014 | - | View |
CM00007G09120 | No description available. | CM3.5_scaffold00007 | - | View |
CM01596G05020 | No description available. | CM3.5_scaffold01596 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00006G01910 | No description available. | supercontig_6 | + | View |
CP00140G00130 | No description available. | supercontig_140 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G00460 | No description available. | scaffold_4 | + | View |
CRU_001G18500 | No description available. | scaffold_1 | - | View |
CRU_002G21110 | No description available. | scaffold_2 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G04980 | No description available. | scaffold00002 | - | View |
CS00017G00530 | No description available. | scaffold00017 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G13080 | No description available. | scaffold_6 | - | View |
EG0009G20080 | No description available. | scaffold_9 | + | View |
EG0009G10480 | No description available. | scaffold_9 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR03G01180 | No description available. | Chr03 | - | View |
GR05G11060 | No description available. | Chr05 | - | View |
GR02G12560 | No description available. | Chr02 | + | View |
GR10G00680 | No description available. | Chr10 | + | View |
GR05G24710 | No description available. | Chr05 | - | View |
GR09G19730 | No description available. | Chr09 | + | View |
GR07G19810 | No description available. | Chr07 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ1G029970 | No description available. | chr1 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD12G015230 | No description available. | 12 | - | View |
MD15G018120 | No description available. | 15 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME06512G00680 | No description available. | scaffold06512 | + | View |
ME09657G00180 | No description available. | scaffold09657 | - | View |
ME07012G00680 | No description available. | scaffold07012 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT1G023230 | zinc finger C LRP1 type protein | chr1 | - | View |
MT4G071110 | zinc finger C LRP1 type protein | chr4 | - | View |
MT3G112510 | transcription factor C putative | chr3 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G37970 | No description available. | scaffold_1 | - | View |
PPE_007G18440 | No description available. | scaffold_7 | - | View |
PPE_008G10610 | No description available. | scaffold_8 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT04G16060 | No description available. | Chr04 | - | View |
PT05G23420 | No description available. | Chr05 | - | View |
PT09G12160 | No description available. | Chr09 | - | View |
PT02G02850 | No description available. | Chr02 | + | View |
PT07G01750 | No description available. | Chr07 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G04790 | No description available. | 30170 | - | View |
RC30131G02490 | No description available. | 30131 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL01G110140 | Stylish (AHRD V1 **-- D2KC71_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | ch01 | - | View |
SL02G084680 | Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | ch02 | + | View |
SL04G080970 | Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | ch04 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST04G034360 | Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | chr04 | - | View |
ST02G027800 | Short internode related sequence 7 (AHRD V1 **-- D2KC77_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | chr02 | + | View |
ST01G047570 | Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 | chr01 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0002G07470 | No description available. | scaffold_2 | + | View |
TC0008G03510 | No description available. | scaffold_8 | - | View |
TC0001G02360 | No description available. | scaffold_1 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G17600 | similar to AT1G19790|SRS7 (SHI-RELATED SEQUENCE 7) | ch1-1 | - | View |
TP5G30650 | similar to AT1G75520|SRS5 (SHI-RELATED SEQUENCE 5) | ch5-7 | - | View |
TP4G00580 | similar to AT2G21400|SRS3 (SHI-RELATED SEQUENCE3) | ch4-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV04G01250 | name=GSVIVG01018845001; | chr4 | - | View |
VV18G09810 | name=GSVIVG01009812001; | chr18 | - | View |
VV03G06180 | name=GSVIVG01024206001; | chr3 | - | View |