Anchorpoints

Gene id
GM04G04435
Organism
Glycine max

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
GM17G18380No description available.Gm17+View
GM14G09460No description available.Gm14-View
GM11G05600No description available.Gm11+View
GM06G04560No description available.Gm06-View
GM01G39660No description available.Gm01-View
GM17G35690No description available.Gm17+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G19590No description available.scaffold_5+View
AL1G40270No description available.scaffold_1-View
AL8G33240No description available.scaffold_8+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G50080VIER F-box proteine 2 Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. VIER F-box proteine 2 (VFB2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation, ubiquitin-dependent protein catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: SKP1/ASK1-interacting protein 2 (TAIR:AT5G67250.1); Has 4306 Blast hits to 2435 proteins in 203 species: Archae - 0; Bacteria - 23; Metazoa - 1627; Fungi - 317; Plants - 1918; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).3+View
AT5G67240small RNA degrading nuclease 3 small RNA degrading nuclease 3 (SDN3); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 2616 Blast hits to 2408 proteins in 300 species: Archae - 3; Bacteria - 109; Metazoa - 996; Fungi - 649; Plants - 362; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).5-View
AT1G47056VIER F-box proteine 1 (VFB1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: stomatal complex, sepal, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: VIER F-box proteine 3 (TAIR:AT4G07400.1); Has 4631 Blast hits to 2722 proteins in 229 species: Archae - 0; Bacteria - 68; Metazoa - 1574; Fungi - 394; Plants - 2158; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink). Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB2,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. VIER F-box proteine 11-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G32110No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G22790No description available.Bvchr6.sca001-View
BV1G14490No description available.Bvchr1.sca008-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G21370No description available.Chr5-View
CL01G17320No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00029G01590No description available.CM3.5_scaffold00029-View
CM00007G06090No description available.CM3.5_scaffold00007-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00021G01500No description available.supercontig_21+View
CP00055G00930No description available.supercontig_55+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G15370No description available.scaffold_5+View
CRU_008G26420No description available.scaffold_8+View
CRU_001G34120No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G02540No description available.scaffold00002+View
CS00006G01660No description available.scaffold00006+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G06430No description available.scaffold_9+View
EG0006G01570No description available.scaffold_6+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G17590F-box protein SKIP2 (putative)LG1+View
FV2G33180F-box protein At1g47056 (similar to)LG2+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G21540No description available.Chr09-View
GR03G02700No description available.Chr03-View
GR02G13370No description available.Chr02+View
GR10G02290No description available.Chr10-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD15G022570No description available.15-View
MD08G010570No description available.8+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME00492G00090No description available.scaffold00492+View
ME03484G00140No description available.scaffold03484+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G018790F-box SKIP2-like proteinchr1+View
MT4G094932F-box protein SKIP2chr4-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS04G55700exonuclease, putative, expressed4-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G43580No description available.scaffold_1+View
PPE_006G23870No description available.scaffold_6+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT14G02350No description available.Chr14+View
PT02G12310No description available.Chr02+View
PT07G04800No description available.Chr07-View
PT05G14180No description available.Chr05-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29970G00070No description available.29970-View
RC30170G01730No description available.30170+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G078490F-box/LRR-repeat protein 2 (AHRD V1 *-*- B4G0B1_MAIZE)%3B contains Interpro domain(s) IPR001810 Cyclin-like F-boxch04+View
SL02G092990SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** C9SVX6_VERA1)%3B contains Interpro domain(s) IPR001810 Cyclin-like F-boxch02+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G031440SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** GRRA_EMENI); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtypechr04+View
ST02G031470SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** C9SVX6_VERA1); contains Interpro domain(s) IPR001810 Cyclin-like F-boxchr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0008G00130No description available.scaffold_8+View
TC0001G05980No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G34260similar to AT1G47056|VFB1 (VIER F-BOX PROTEINE 1)ch1-2-View
TP5G12020similar to AT3G50100|SDN1 (SMALL RNA DEGRADING NUCLEASE 1)ch5-1-View
TP2G29420similar to AT5G67250|SKIP2 (SKP1/ASK1 INTERACTING PROTEIN 2)ch2-4+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV07G00960name=GSVIVG01000227001;chr7+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM02G02340No description available.2+View


Download

Gene id
Species
Description
Chromosome
Strand