Anchorpoints
- Gene id
- GM04G04435
- Organism
- Glycine max
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM17G18380 | No description available. | Gm17 | + | View |
GM14G09460 | No description available. | Gm14 | - | View |
GM11G05600 | No description available. | Gm11 | + | View |
GM06G04560 | No description available. | Gm06 | - | View |
GM01G39660 | No description available. | Gm01 | - | View |
GM17G35690 | No description available. | Gm17 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL5G19590 | No description available. | scaffold_5 | + | View |
AL1G40270 | No description available. | scaffold_1 | - | View |
AL8G33240 | No description available. | scaffold_8 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G50080 | VIER F-box proteine 2 Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. VIER F-box proteine 2 (VFB2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation, ubiquitin-dependent protein catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: SKP1/ASK1-interacting protein 2 (TAIR:AT5G67250.1); Has 4306 Blast hits to 2435 proteins in 203 species: Archae - 0; Bacteria - 23; Metazoa - 1627; Fungi - 317; Plants - 1918; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink). | 3 | + | View |
AT5G67240 | small RNA degrading nuclease 3 small RNA degrading nuclease 3 (SDN3); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 2616 Blast hits to 2408 proteins in 300 species: Archae - 3; Bacteria - 109; Metazoa - 996; Fungi - 649; Plants - 362; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink). | 5 | - | View |
AT1G47056 | VIER F-box proteine 1 (VFB1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: stomatal complex, sepal, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: VIER F-box proteine 3 (TAIR:AT4G07400.1); Has 4631 Blast hits to 2722 proteins in 229 species: Archae - 0; Bacteria - 68; Metazoa - 1574; Fungi - 394; Plants - 2158; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink). Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB2,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. VIER F-box proteine 1 | 1 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR09G32110 | No description available. | A09 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV6G22790 | No description available. | Bvchr6.sca001 | - | View |
BV1G14490 | No description available. | Bvchr1.sca008 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL05G21370 | No description available. | Chr5 | - | View |
CL01G17320 | No description available. | Chr1 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00029G01590 | No description available. | CM3.5_scaffold00029 | - | View |
CM00007G06090 | No description available. | CM3.5_scaffold00007 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00021G01500 | No description available. | supercontig_21 | + | View |
CP00055G00930 | No description available. | supercontig_55 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_005G15370 | No description available. | scaffold_5 | + | View |
CRU_008G26420 | No description available. | scaffold_8 | + | View |
CRU_001G34120 | No description available. | scaffold_1 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G02540 | No description available. | scaffold00002 | + | View |
CS00006G01660 | No description available. | scaffold00006 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G06430 | No description available. | scaffold_9 | + | View |
EG0006G01570 | No description available. | scaffold_6 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV1G17590 | F-box protein SKIP2 (putative) | LG1 | + | View |
FV2G33180 | F-box protein At1g47056 (similar to) | LG2 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR09G21540 | No description available. | Chr09 | - | View |
GR03G02700 | No description available. | Chr03 | - | View |
GR02G13370 | No description available. | Chr02 | + | View |
GR10G02290 | No description available. | Chr10 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD15G022570 | No description available. | 15 | - | View |
MD08G010570 | No description available. | 8 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME00492G00090 | No description available. | scaffold00492 | + | View |
ME03484G00140 | No description available. | scaffold03484 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT1G018790 | F-box SKIP2-like protein | chr1 | + | View |
MT4G094932 | F-box protein SKIP2 | chr4 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS04G55700 | exonuclease, putative, expressed | 4 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G43580 | No description available. | scaffold_1 | + | View |
PPE_006G23870 | No description available. | scaffold_6 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT14G02350 | No description available. | Chr14 | + | View |
PT02G12310 | No description available. | Chr02 | + | View |
PT07G04800 | No description available. | Chr07 | - | View |
PT05G14180 | No description available. | Chr05 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29970G00070 | No description available. | 29970 | - | View |
RC30170G01730 | No description available. | 30170 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL04G078490 | F-box/LRR-repeat protein 2 (AHRD V1 *-*- B4G0B1_MAIZE)%3B contains Interpro domain(s) IPR001810 Cyclin-like F-box | ch04 | + | View |
SL02G092990 | SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** C9SVX6_VERA1)%3B contains Interpro domain(s) IPR001810 Cyclin-like F-box | ch02 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST04G031440 | SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** GRRA_EMENI); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype | chr04 | + | View |
ST02G031470 | SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** C9SVX6_VERA1); contains Interpro domain(s) IPR001810 Cyclin-like F-box | chr02 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0008G00130 | No description available. | scaffold_8 | + | View |
TC0001G05980 | No description available. | scaffold_1 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G34260 | similar to AT1G47056|VFB1 (VIER F-BOX PROTEINE 1) | ch1-2 | - | View |
TP5G12020 | similar to AT3G50100|SDN1 (SMALL RNA DEGRADING NUCLEASE 1) | ch5-1 | - | View |
TP2G29420 | similar to AT5G67250|SKIP2 (SKP1/ASK1 INTERACTING PROTEIN 2) | ch2-4 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV07G00960 | name=GSVIVG01000227001; | chr7 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM02G02340 | No description available. | 2 | + | View |