PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: GM01G34830
Organism: Glycine max

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
GM09G32670	No description available.	Gm09	+	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL4G21330	No description available.	scaffold_4	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G35910	RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G06490.1); Has 8225 Blast hits to 8203 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 1997; Fungi - 507; Plants - 4688; Viruses - 66; Other Eukaryotes - 967 (source: NCBI BLink).	2	-	View
AT3G60966	RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G44581.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). RING/U-box superfamily protein	3	+	View
AT4G28890	RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root stele, root endodermis, hypocotyl, root, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G20030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). RING/U-box superfamily protein	4	-	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
BV8G05100	No description available.	Bvchr8.sca018	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00040G00310	No description available.	supercontig_40	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_007G11080	No description available.	scaffold_7	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00027G00260	No description available.	scaffold00027	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0003G29340	No description available.	scaffold_3	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV0G35220	RING-H2 finger protein ATL4J, Precursor (probable)	scf0513146	-	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR10G07480	No description available.	Chr10	-	View
GR01G00770	No description available.	Chr01	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD02G005330	No description available.	2	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME00847G00690	No description available.	scaffold00847	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT3G110190	RING-H2 finger protein ATL4J	chr3	-	View
MT6G087150	RING-H2 finger protein ATL4J	chr6	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_007G24350	No description available.	scaffold_7	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT18G04240	No description available.	Chr18	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL12G007320	Ring H2 finger protein (AHRD V1 -- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type	ch12	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST12G009440	E3 ubiquitin-protein ligase Os04g0590900 (AHRD V1 -* ATL41_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type	chr12	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0009G09960	No description available.	scaffold_9	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV11G04720	name=GSVIVG01015336001;	chr11	+	View