Anchorpoints

Gene id
EG0004G18240
Organism
Eucalyptus grandis

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
EG0005G02210No description available.scaffold_5+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G25200No description available.scaffold_7-View
AL1G33550No description available.scaffold_1+View
AL8G01280No description available.scaffold_8+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G46860Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164?220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic. Syntaxin/t-SNARE family protein VACUOLAR MORPHOLOGY 3 (VAM3); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: in 7 processes; LOCATED IN: late endosome, trans-Golgi network transport vesicle, plant-type vacuole membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 23 (TAIR:AT4G17730.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).5-View
AT1G32270syntaxin, putative member of SYP2 Gene Family ATSYP24; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 1336 Blast hits to 1336 proteins in 217 species: Archae - 0; Bacteria - 9; Metazoa - 416; Fungi - 220; Plants - 605; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).1+View
AT4G17730member of SYP2 Gene Family syntaxin of plants 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 1783 Blast hits to 1783 proteins in 244 species: Archae - 0; Bacteria - 6; Metazoa - 845; Fungi - 276; Plants - 461; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink). syntaxin of plants 234+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G36650No description available.A06+View
BR01G08970No description available.A01+View
BR02G28990No description available.A02-View
BR03G44080No description available.A03+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G18050No description available.Bvchr5.sca008-View
BV3G10080No description available.Bvchr3.sca001-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G00730No description available.Chr10-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00021G01410No description available.CM3.5_scaffold00021+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_008G01060No description available.scaffold_8+View
CRU_007G22570No description available.scaffold_7-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G30010Syntaxin-22 (AtSYP22) (similar to)scf0513178+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM09G33950No description available.Gm09-View
GM01G01960No description available.Gm01+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR04G18310No description available.Chr04+View
GR08G22480No description available.Chr08+View
GR03G18410No description available.Chr03-View
GR06G21760No description available.Chr06-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD06G003810No description available.6-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G029650syntaxin of plants proteinchr5+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G31310No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G13850No description available.Chr01+View
PT03G09530No description available.Chr03-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G062360Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU)%3B contains Interpro domain(s) IPR010989 t-SNAREch06-View
SL08G005200Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU)%3B contains Interpro domain(s) IPR010989 t-SNAREch08-View
SL08G076540Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU)%3B contains Interpro domain(s) IPR010989 t-SNAREch08+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G021760Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU); contains Interpro domain(s) IPR010989 t-SNAREchr08-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G16380similar to AT4G17730|SYP23 (SYNTAXIN OF PLANTS 23)ch7-4-View
TP2G11660similar to AT5G46860|VAM3ch2-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV02G01890name=GSVIVG01013100001;chr2-View


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Gene id
Species
Description
Chromosome
Strand