Anchorpoints
- Gene id
- EG0004G18240
- Organism
- Eucalyptus grandis
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0005G02210 | No description available. | scaffold_5 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL7G25200 | No description available. | scaffold_7 | - | View |
AL1G33550 | No description available. | scaffold_1 | + | View |
AL8G01280 | No description available. | scaffold_8 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT5G46860 | Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164?220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic. Syntaxin/t-SNARE family protein VACUOLAR MORPHOLOGY 3 (VAM3); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: in 7 processes; LOCATED IN: late endosome, trans-Golgi network transport vesicle, plant-type vacuole membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 23 (TAIR:AT4G17730.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 5 | - | View |
AT1G32270 | syntaxin, putative member of SYP2 Gene Family ATSYP24; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 1336 Blast hits to 1336 proteins in 217 species: Archae - 0; Bacteria - 9; Metazoa - 416; Fungi - 220; Plants - 605; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink). | 1 | + | View |
AT4G17730 | member of SYP2 Gene Family syntaxin of plants 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 1783 Blast hits to 1783 proteins in 244 species: Archae - 0; Bacteria - 6; Metazoa - 845; Fungi - 276; Plants - 461; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink). syntaxin of plants 23 | 4 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR06G36650 | No description available. | A06 | + | View |
BR01G08970 | No description available. | A01 | + | View |
BR02G28990 | No description available. | A02 | - | View |
BR03G44080 | No description available. | A03 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV5G18050 | No description available. | Bvchr5.sca008 | - | View |
BV3G10080 | No description available. | Bvchr3.sca001 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL10G00730 | No description available. | Chr10 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00021G01410 | No description available. | CM3.5_scaffold00021 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_008G01060 | No description available. | scaffold_8 | + | View |
CRU_007G22570 | No description available. | scaffold_7 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G30010 | Syntaxin-22 (AtSYP22) (similar to) | scf0513178 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM09G33950 | No description available. | Gm09 | - | View |
GM01G01960 | No description available. | Gm01 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR04G18310 | No description available. | Chr04 | + | View |
GR08G22480 | No description available. | Chr08 | + | View |
GR03G18410 | No description available. | Chr03 | - | View |
GR06G21760 | No description available. | Chr06 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD06G003810 | No description available. | 6 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT5G029650 | syntaxin of plants protein | chr5 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_002G31310 | No description available. | scaffold_2 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT01G13850 | No description available. | Chr01 | + | View |
PT03G09530 | No description available. | Chr03 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL06G062360 | Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU)%3B contains Interpro domain(s) IPR010989 t-SNARE | ch06 | - | View |
SL08G005200 | Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU)%3B contains Interpro domain(s) IPR010989 t-SNARE | ch08 | - | View |
SL08G076540 | Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU)%3B contains Interpro domain(s) IPR010989 t-SNARE | ch08 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST08G021760 | Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU); contains Interpro domain(s) IPR010989 t-SNARE | chr08 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP7G16380 | similar to AT4G17730|SYP23 (SYNTAXIN OF PLANTS 23) | ch7-4 | - | View |
TP2G11660 | similar to AT5G46860|VAM3 | ch2-4 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV02G01890 | name=GSVIVG01013100001; | chr2 | - | View |