Anchorpoints

Gene id
CRU_005G17410
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G21930No description available.scaffold_5-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G52180Encodes a plant-specific glucan phosphatase that contains a noncatalytic carbohydrate-binding module as well as a dual specificity protein phosphatase domain. SEX4 can dephosphorylate C6- and C3-glucosyl residues on native starch grains and related maltodextrin compounds in vitro. This protein interacts with the plant SnRK AKIN11, binds starch, and is localized in the chloroplast. sex4 mutants have elevated levels of starch. dual specificity protein phosphatase (DsPTP1) family protein STARCH-EXCESS 4 (SEX4); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity, polysaccharide binding; INVOLVED IN: protein amino acid dephosphorylation, starch metabolic process, starch catabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein (TAIR:AT3G10940.1); Has 675 Blast hits to 675 proteins in 103 species: Archae - 6; Bacteria - 6; Metazoa - 399; Fungi - 10; Plants - 178; Viruses - 3; Other Eukaryotes - 73 (source: NCBI BLink).3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G33730No description available.A09-View
BR04G05920No description available.A04+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00128G00700No description available.supercontig_128+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G21410No description available.scaffold_7+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G23220No description available.Chr10-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G007830Dual-specificity protein-like phosphatase 3 (AHRD V1 ***- Q3S4H5_MAIZE)%3B contains Interpro domain(s) IPR000387 Dual-specific/protein-tyrosine phosphatase%2C conserved region IPR020422 Dual specificity phosphatase%2C subgroup%2C catalytic domainch11+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G010680Dual-specificity protein-like phosphatase 3 (AHRD V1 ***- Q3S4H5_MAIZE); contains Interpro domain(s) IPR000340 Dual specificity phosphatase, catalytic domainchr11+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G10090similar to AT3G52180|SEX4 (STARCH-EXCESS 4)ch5-1+View


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Gene id
Species
Description
Chromosome
Strand