Anchorpoints

Gene id
CRU_005G12010
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CRU_008G19490No description available.scaffold_8+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G19360No description available.scaffold_1+View
AL5G14950No description available.scaffold_5+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G18450actin-related protein 4 actin-related protein 4 (ARP4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: long-day photoperiodism, flowering, chromatin organization, pollen sperm cell differentiation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 13669 Blast hits to 13362 proteins in 2792 species: Archae - 2; Bacteria - 480; Metazoa - 5593; Fungi - 3430; Plants - 1457; Viruses - 2; Other Eukaryotes - 2705 (source: NCBI BLink). Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.1+View
AT3G46520Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development. actin-12 actin-12 (ACT12); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: cytoskeleton organization; LOCATED IN: mitochondrion, cytoskeleton; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 4 (TAIR:AT5G59370.2); Has 15176 Blast hits to 14784 proteins in 3040 species: Archae - 8; Bacteria - 8; Metazoa - 5711; Fungi - 5220; Plants - 1602; Viruses - 2; Other Eukaryotes - 2625 (source: NCBI BLink).3+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G20440No description available.A06-View
BR01G22520No description available.A01+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV7G06640No description available.Bvchr7.sca021-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G20390No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00063G00570No description available.CM3.5_scaffold00063-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G03880No description available.supercontig_1+View
CP00081G01630No description available.supercontig_81-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00014G00550No description available.scaffold00014-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G13270ActinLG6-View
FV7G26430Actin (similar to)LG7-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM13G41060No description available.Gm13+View
GM12G06820No description available.Gm12-View
GM11G14880No description available.Gm11-View
GM15G04360No description available.Gm15-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G11040No description available.Chr01+View
GR03G13240No description available.Chr03-View
GR13G26410No description available.Chr13-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD11G008070No description available.11-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME08265G02040No description available.scaffold08265+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G22640No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G05550No description available.Chr08+View
PT10G20430No description available.Chr10-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G076090Actin (AHRD V1 ***- B5M4V6_TOBAC)%3B contains Interpro domain(s) IPR004000 Actin/actin-likech06+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST06G031940Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like Actin-85C Actin-82chr06+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0009G31710No description available.scaffold_9-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G16390similar to AT1G18450|ATARP4ch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G03730name=GSVIVG01024980001;chr6+View


Download

Gene id
Species
Description
Chromosome
Strand