Anchorpoints

Gene id
CRU_003G29140
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CRU_007G05260No description available.scaffold_7+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G06220No description available.scaffold_7+View
AL3G40540No description available.scaffold_3-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G16500encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Promoter region of ADC1 contains 742-bp AT-rich transposable element, called AtATE, that belongs to the MITE families of repetitive elements. arginine decarboxylase 1 arginine decarboxylase 1 (ADC1); CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644); BEST Arabidopsis thaliana protein match is: arginine decarboxylase 2 (TAIR:AT4G34710.2); Has 7460 Blast hits to 7389 proteins in 2069 species: Archae - 108; Bacteria - 5016; Metazoa - 91; Fungi - 35; Plants - 637; Viruses - 2; Other Eukaryotes - 1571 (source: NCBI BLink).2-View
AT4G34710arginine decarboxylase 2 (ADC2); CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644); BEST Arabidopsis thaliana protein match is: arginine decarboxylase 1 (TAIR:AT2G16500.1); Has 7853 Blast hits to 7777 proteins in 2122 species: Archae - 112; Bacteria - 5255; Metazoa - 102; Fungi - 32; Plants - 645; Viruses - 2; Other Eukaryotes - 1705 (source: NCBI BLink). arginine decarboxylase 2 encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.4-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR01G03470No description available.A01+View
BR08G13770No description available.A08+View
BR03G54370No description available.A03-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL11G15040No description available.Chr11-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00059G01820No description available.CM3.5_scaffold00059-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00150G00130No description available.supercontig_150+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G12730No description available.scaffold_7-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM06G00990No description available.Gm06+View
GM04G00960No description available.Gm04+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR12G15410No description available.Chr12+View
GR05G24870No description available.Chr05-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G047760No description available.chr3+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME02994G00100No description available.scaffold02994+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G113910pyridoxal-binding domain pyridoxal-dependent decarboxylasechr3-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G16330No description available.Chr04-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30131G02860No description available.30131-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G054440Arginine decarboxylase (AHRD V1 **** Q5F307_SOLLC)%3B contains Interpro domain(s) IPR002985 Arginine decarboxylasech10-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G047890Biosynthetic arginine decarboxylase (AHRD V1 **** D4ZWX9_SPIPL); contains Interpro domain(s) IPR002985 Arginine decarboxylasechr01+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G29770similar to AT2G16500|ADC1 (ARGININE DECARBOXYLASE 1)ch3-5-View
TP7G32490similar to AT4G34710|ADC2 (ARGININE DECARBOXYLASE 2)ch7-5-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV03G05830name=GSVIVG01024167001;chr3-View


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Description
Chromosome
Strand