Anchorpoints
- Gene id
- CRU_002G21710
- Organism
- Capsella rubella
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G19060 | No description available. | scaffold_1 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL2G25000 | No description available. | scaffold_2 | - | View |
AL1G21440 | No description available. | scaffold_1 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G76120 | Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G20370.1); Has 3359 Blast hits to 3090 proteins in 1171 species: Archae - 124; Bacteria - 1897; Metazoa - 335; Fungi - 288; Plants - 173; Viruses - 0; Other Eukaryotes - 542 (source: NCBI BLink). Pseudouridine synthase family protein | 1 | - | View |
AT1G20370 | Pseudouridine synthase family protein Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 3883 Blast hits to 3550 proteins in 1359 species: Archae - 140; Bacteria - 2302; Metazoa - 346; Fungi - 312; Plants - 197; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink). | 1 | - | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00001G01760 | No description available. | scaffold00001 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR07G31320 | No description available. | A07 | - | View |
BR06G14700 | No description available. | A06 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL05G16580 | No description available. | Chr5 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00029G03820 | No description available. | CM3.5_scaffold00029 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00026G02440 | No description available. | supercontig_26 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G06170 | No description available. | scaffold00002 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G13900 | No description available. | scaffold_6 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV2G37760 | tRNA pseudouridine synthase 1 (probable) | LG2 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME02943G00690 | No description available. | scaffold02943 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G36650 | No description available. | scaffold_1 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT05G24700 | No description available. | Chr05 | - | View |
PT02G01440 | No description available. | Chr02 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G06270 | No description available. | 30170 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL04G082070 | tRNA pseudouridine synthase family protein (AHRD V1 *-** B6TLN6_MAIZE)%3B contains Interpro domain(s) IPR001406 Pseudouridine synthase I%2C TruA | ch04 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST04G035460 | tRNA pseudouridine synthase family protein (AHRD V1 **** E5GCD2_CUCME); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA | chr04 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G18110 | similar to AT1G20370|tRNA pseudouridine synthase family protein | ch1-1 | - | View |
TP5G31240 | similar to AT1G76120|tRNA pseudouridine synthase family protein | ch5-7 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G00910 | name=GSVIVG01008716001; | chr18 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM05G36080 | LOC100283773;LOC100283773 | 5 | + | View |