Anchorpoints

Gene id
CRU_001G23220
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CRU_001G13250No description available.scaffold_1-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G26790No description available.scaffold_1+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G26800RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 9899 Blast hits to 9869 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 2681; Fungi - 828; Plants - 5098; Viruses - 14; Other Eukaryotes - 1278 (source: NCBI BLink).1-View
AT2G03000RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 30893 Blast hits to 17053 proteins in 804 species: Archae - 45; Bacteria - 3195; Metazoa - 9909; Fungi - 5711; Plants - 4804; Viruses - 543; Other Eukaryotes - 6686 (source: NCBI BLink).2+View
AT1G14200RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G26800.1); Has 10250 Blast hits to 10222 proteins in 289 species: Archae - 0; Bacteria - 6; Metazoa - 2721; Fungi - 824; Plants - 5163; Viruses - 73; Other Eukaryotes - 1463 (source: NCBI BLink). RING/U-box superfamily protein1-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00010G04840No description available.scaffold00010+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G48420No description available.A09+View
BR07G08310No description available.A07-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G02530No description available.Bvchr6.sca028-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G09390No description available.Chr1+View
CL09G18660No description available.Chr9-View
CL05G25190No description available.Chr5-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00016G04290No description available.CM3.5_scaffold00016+View
CM00051G00320No description available.CM3.5_scaffold00051+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00128G00360No description available.supercontig_128+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00003G04410No description available.scaffold00003+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G19290No description available.scaffold_7-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G44300RING-H2 finger protein ATL5P (probable)LG6-View
FV0G05450RING finger protein 126 (probable)scf0513158-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM01G05880No description available.Gm01+View
GM02G12050No description available.Gm02+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR12G05350No description available.Chr12-View
GR06G01570No description available.Chr06-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G021650No description available.chr2-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD13G004630No description available.13-View
MD17G004150No description available.17+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11581G01580No description available.scaffold11581+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G041310zinc finger C C3HC4 type (RING finger) proteinchr5+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G28710No description available.scaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G08720No description available.Chr08+View
PT10G16830No description available.Chr10-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29813G00510No description available.29813+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G005740RING finger protein 38 (AHRD V1 *-*- RNF38_MOUSE)%3B contains Interpro domain(s) IPR011016 Zinc finger%2C RING-CH-typech04+View
SL02G088030RING finger protein 44 (AHRD V1 *-*- RNF44_MOUSE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech02+View
SL02G067260RING finger protein 6 (AHRD V1 *-*- RNF6_HUMAN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech02-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G005400RING finger protein 43 (AHRD V1 *--- RNF43_HUMAN); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-typechr04+View
ST02G034820RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr02-View
ST02G013110RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr02-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G34320No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G14040similar to AT2G03000|zinc finger (C3HC4-type RING finger) family proteinch2-4+View
TP1G12540similar to AT1G14200|zinc finger (C3HC4-type RING finger) family proteinch1-1-View
TP1G21990similar to AT1G26800|zinc finger (C3HC4-type RING finger) family proteinch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G11990name=GSVIVG01019972001;chr1+View


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Gene id
Species
Description
Chromosome
Strand