Anchorpoints

Gene id
CRU_001G15920
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CRU_003G13980No description available.scaffold_3+View
CRU_008G02190No description available.scaffold_8-View
CRU_007G21410No description available.scaffold_7+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G02700No description available.scaffold_8-View
AL1G17800No description available.scaffold_1-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G45750RAB GTPase homolog A1C RAB GTPase homolog A1C (RABA1c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28355 Blast hits to 28298 proteins in 771 species: Archae - 32; Bacteria - 162; Metazoa - 14720; Fungi - 4238; Plants - 3283; Viruses - 20; Other Eukaryotes - 5900 (source: NCBI BLink).5+View
AT4G18800RAB GTPase homolog A1D RAB GTPase homolog A1D (RABA1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1C (TAIR:AT5G45750.1); Has 27980 Blast hits to 27923 proteins in 754 species: Archae - 26; Bacteria - 162; Metazoa - 14618; Fungi - 4214; Plants - 3069; Viruses - 20; Other Eukaryotes - 5871 (source: NCBI BLink). Encodes RabA1d, a member of the RabA subfamily of small Rab GTPases.4-View
AT1G16920small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking. RAB GTPase homolog A1B RAB GTPase homolog A1B (RABA1b); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28198 Blast hits to 28143 proteins in 766 species: Archae - 30; Bacteria - 158; Metazoa - 14550; Fungi - 4232; Plants - 3316; Viruses - 20; Other Eukaryotes - 5892 (source: NCBI BLink).1-View
AT3G15060RAB GTPase homolog A1G RAB GTPase homolog A1G (RABA1g); FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27884 Blast hits to 27831 proteins in 751 species: Archae - 32; Bacteria - 137; Metazoa - 14654; Fungi - 4198; Plants - 2964; Viruses - 20; Other Eukaryotes - 5879 (source: NCBI BLink).3+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G46910No description available.A09+View
BR03G34260No description available.A03+View
BR08G26720No description available.A08+View
BR06G12000No description available.A06-View
BR01G09940No description available.A01-View
BR01G33680No description available.A01-View
BR06G37360No description available.A06-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G23990No description available.Chr1-View
CL07G14860No description available.Chr7+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00027G00670No description available.CM3.5_scaffold00027+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00077G00250No description available.supercontig_77-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G17790Ras-related protein Rab11BLG3+View
FV3G18820Ras-related protein Rab11D (putative)LG3-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM12G35970No description available.Gm12-View
GM13G34410No description available.Gm13+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G004520No description available.chr3-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G015960No description available.9-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11341G00460No description available.scaffold11341-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G15280No description available.Chr01+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL07G055290Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN)%3B contains Interpro domain(s) IPR015595 Rab11-relatedch07-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G10620similar to AT5G45750|AtRABA1c (Arabidopsis Rab GTPase homolog A1c)ch2-4+View
TP1G15060similar to AT1G16920|ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)ch1-1-View


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Gene id
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Description
Chromosome
Strand