Anchorpoints

Gene id
CRU_001G07070
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G08130DNA ligase 1 Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink).1-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G51740No description available.A09+View
BR06G04970No description available.A06-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G21660No description available.Chr2-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00061G00460No description available.scaffold00061-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM11G19880No description available.Gm11+View
GM12G08600No description available.Gm12-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G14600No description available.Chr03-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G043550No description available.chr3-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G057340DNA ligase I C ATP-dependent proteinchr4+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G10990No description available.scaffold_6-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT09G00590No description available.Chr09+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29589G00310No description available.29589-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G06770similar to AT1G08130|ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1)ch1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G08870name=GSVIVG01031470001;chr6-View


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Gene id
Species
Description
Chromosome
Strand