Anchorpoints
- Gene id
- CRU_001G01860
- Organism
- Capsella rubella
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_006G33450 | No description available. | scaffold_6 | + | View |
CRU_003G04620 | No description available. | scaffold_3 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G02150 | No description available. | scaffold_1 | - | View |
AL6G38890 | No description available. | scaffold_6 | + | View |
AL3G05440 | No description available. | scaffold_3 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G02890 | AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), SMAD/FHA domain (InterPro:IPR008984); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 33727 Blast hits to 31290 proteins in 3133 species: Archae - 1605; Bacteria - 13154; Metazoa - 4868; Fungi - 3603; Plants - 2878; Viruses - 36; Other Eukaryotes - 7583 (source: NCBI BLink). AAA-type ATPase family protein | 1 | - | View |
AT4G02480 | AAA-type ATPase family protein AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). | 4 | - | View |
AT3G05530 | Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. regulatory particle triple-A ATPase 5A regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink). | 3 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR09G00400 | No description available. | A09 | + | View |
BR03G27250 | No description available. | A03 | + | View |
BR05G15620 | No description available. | A05 | + | View |
BR09G54210 | No description available. | A09 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV4G09490 | No description available. | Bvchr4.sca002 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL09G05610 | No description available. | Chr9 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00026G03460 | No description available. | CM3.5_scaffold00026 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00009G02120 | No description available. | supercontig_9 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00001G07810 | No description available. | scaffold00001 | - | View |
CS00001G08160 | No description available. | scaffold00001 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0008G09970 | No description available. | scaffold_8 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV2G27830 | ATPase family AAA domain-containing protein 1 (probable) | LG2 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM10G29250 | No description available. | Gm10 | - | View |
GM10G02400 | No description available. | Gm10 | - | View |
GM20G38030 | No description available. | Gm20 | + | View |
GM03G39500 | No description available. | Gm03 | - | View |
GM03G36930 | No description available. | Gm03 | + | View |
GM02G17400 | No description available. | Gm02 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR08G14650 | No description available. | Chr08 | - | View |
GR07G12870 | No description available. | Chr07 | - | View |
GR13G12590 | No description available. | Chr13 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD03G024320 | No description available. | 3 | + | View |
MD03G025630 | No description available. | 3 | - | View |
MD11G027950 | No description available. | 11 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME04457G00910 | No description available. | scaffold04457 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT1G088730 | P-loop nucleoside triphosphate hydrolase superfamily protein | chr1 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS11G43970 | AAA-type ATPase family protein, putative, expressed | 11 | - | View |
OS07G47530 | AAA-type ATPase family protein, putative, expressed | 7 | + | View |
Physcomitrella patens
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PP00029G01360 | No description available. | scaffold_29 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_008G27150 | No description available. | scaffold_8 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT02G20590 | No description available. | Chr02 | - | View |
PT13G01680 | No description available. | Chr13 | - | View |
PT14G13100 | No description available. | Chr14 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29986G00010 | No description available. | 29986 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL06G084530 | Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_MOUSE)%3B contains Interpro domain(s) IPR003959 ATPase%2C AAA-type%2C core | ch06 | + | View |
SL09G074950 | Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH)%3B contains Interpro domain(s) IPR003959 ATPase%2C AAA-type%2C core | ch09 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST08G012600 | ATP-dependent zinc metalloprotease FtsH 1 (AHRD V1 ***- B4RB47_PHEZH); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH | chr08 | - | View |
ST06G035030 | ATPase (AHRD V1 *--- E9BXK2_9EUKA); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core | chr06 | + | View |
ST02G005260 | Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core | chr02 | - | View |
ST09G022140 | Katanin p60 ATPase-containing subunit A1 (AHRD V1 *--- KTNA1_XENTR); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core | chr09 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G29620 | No description available. | scaffold_1 | + | View |
TC0005G31080 | No description available. | scaffold_5 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP3G04370 | similar to AT3G05530|RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) | ch3-1 | + | View |
TP1G01890 | similar to AT1G02890|AAA-type ATPase family protein | ch1-1 | - | View |
TP6G02380 | similar to AT4G02480|AAA-type ATPase family protein | ch6-1 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM02G40720 | No description available. | 2 | + | View |