Anchorpoints

Gene id
CRU_001G01860
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CRU_006G33450No description available.scaffold_6+View
CRU_003G04620No description available.scaffold_3+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G02150No description available.scaffold_1-View
AL6G38890No description available.scaffold_6+View
AL3G05440No description available.scaffold_3+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G02890AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), SMAD/FHA domain (InterPro:IPR008984); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 33727 Blast hits to 31290 proteins in 3133 species: Archae - 1605; Bacteria - 13154; Metazoa - 4868; Fungi - 3603; Plants - 2878; Viruses - 36; Other Eukaryotes - 7583 (source: NCBI BLink). AAA-type ATPase family protein1-View
AT4G02480AAA-type ATPase family protein AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink).4-View
AT3G05530Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. regulatory particle triple-A ATPase 5A regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink).3+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G00400No description available.A09+View
BR03G27250No description available.A03+View
BR05G15620No description available.A05+View
BR09G54210No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV4G09490No description available.Bvchr4.sca002+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL09G05610No description available.Chr9-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00026G03460No description available.CM3.5_scaffold00026-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00009G02120No description available.supercontig_9+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00001G07810No description available.scaffold00001-View
CS00001G08160No description available.scaffold00001-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0008G09970No description available.scaffold_8-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G27830ATPase family AAA domain-containing protein 1 (probable)LG2+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM10G29250No description available.Gm10-View
GM10G02400No description available.Gm10-View
GM20G38030No description available.Gm20+View
GM03G39500No description available.Gm03-View
GM03G36930No description available.Gm03+View
GM02G17400No description available.Gm02+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G14650No description available.Chr08-View
GR07G12870No description available.Chr07-View
GR13G12590No description available.Chr13+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD03G024320No description available.3+View
MD03G025630No description available.3-View
MD11G027950No description available.11+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04457G00910No description available.scaffold04457-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G088730P-loop nucleoside triphosphate hydrolase superfamily proteinchr1-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS11G43970AAA-type ATPase family protein, putative, expressed11-View
OS07G47530AAA-type ATPase family protein, putative, expressed7+View

Physcomitrella patens

Gene id Description Chromosome Strand Multiplicon
PP00029G01360No description available.scaffold_29+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G27150No description available.scaffold_8+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G20590No description available.Chr02-View
PT13G01680No description available.Chr13-View
PT14G13100No description available.Chr14-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29986G00010No description available.29986+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G084530Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_MOUSE)%3B contains Interpro domain(s) IPR003959 ATPase%2C AAA-type%2C corech06+View
SL09G074950Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH)%3B contains Interpro domain(s) IPR003959 ATPase%2C AAA-type%2C corech09+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G012600ATP-dependent zinc metalloprotease FtsH 1 (AHRD V1 ***- B4RB47_PHEZH); contains Interpro domain(s) IPR005936 Peptidase M41, FtsHchr08-View
ST06G035030ATPase (AHRD V1 *--- E9BXK2_9EUKA); contains Interpro domain(s) IPR003959 ATPase, AAA-type, corechr06+View
ST02G005260Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, corechr02-View
ST09G022140Katanin p60 ATPase-containing subunit A1 (AHRD V1 *--- KTNA1_XENTR); contains Interpro domain(s) IPR003959 ATPase, AAA-type, corechr09-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G29620No description available.scaffold_1+View
TC0005G31080No description available.scaffold_5+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G04370similar to AT3G05530|RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)ch3-1+View
TP1G01890similar to AT1G02890|AAA-type ATPase family proteinch1-1-View
TP6G02380similar to AT4G02480|AAA-type ATPase family proteinch6-1-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM02G40720No description available.2+View


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Gene id
Species
Description
Chromosome
Strand