Anchorpoints

Gene id
CRU_001G01430
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G33140No description available.scaffold_5+View
AL1G01720No description available.scaffold_1+View
AL6G39710No description available.scaffold_6+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G62150P-glycoprotein 21 (PGP21); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP binding cassette subfamily B4 (TAIR:AT2G47000.1); Has 850676 Blast hits to 393228 proteins in 4171 species: Archae - 14744; Bacteria - 664075; Metazoa - 17906; Fungi - 12823; Plants - 9925; Viruses - 47; Other Eukaryotes - 131156 (source: NCBI BLink). Encodes a facultative transporter controlling auxin concentrations in plant cells. P-glycoprotein 213-View
AT4G01820member of MDR subfamily P-glycoprotein 3 P-glycoprotein 3 (PGP3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 5 (TAIR:AT4G01830.1); Has 830190 Blast hits to 386538 proteins in 4151 species: Archae - 14649; Bacteria - 648558; Metazoa - 17709; Fungi - 12207; Plants - 9512; Viruses - 34; Other Eukaryotes - 127521 (source: NCBI BLink).4-View
AT1G02520P-glycoprotein 11 (PGP11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1); Has 844961 Blast hits to 391444 proteins in 4162 species: Archae - 14749; Bacteria - 659839; Metazoa - 18308; Fungi - 13140; Plants - 9783; Viruses - 35; Other Eukaryotes - 129107 (source: NCBI BLink). Encodes an ATP-binding cassette (ABC) transporter. Expressed in the vascular tissue of primary stem. P-glycoprotein 111+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00045G01020No description available.scaffold00045+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR10G05460No description available.A10-View
BR08G32020No description available.A08-View
BR05G00760No description available.A05+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00001G05810No description available.scaffold00001-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM03G38300No description available.Gm03+View
GM20G38380No description available.Gm20-View
GM02G01100No description available.Gm02-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR04G14720No description available.Chr04+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07571G00600No description available.scaffold07571-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G18670MDR-like ABC transporter, putative, expressed1-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_010G00300No description available.scaffold_10-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G18740No description available.Chr02-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30076G01190No description available.30076-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G009280Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS)%3B contains Interpro domain(s) IPR003439 ABC transporter-likech06-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G01570similar to AT1G02530|PGP12 (P-GLYCOPROTEIN 12)ch1-1+View
TP6G01670similar to AT4G01830|PGP5 (P-GLYCOPROTEIN 5)ch6-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV07G10390name=GSVIVG01028256001;chr7-View


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Strand