Anchorpoints

Gene id
CP00085G00580
Organism
Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G06360No description available.scaffold_6+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G12060Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). TRICHOME BIREFRINGENCE-LIKE 1 (TBL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G06700.1); Has 1352 Blast hits to 1335 proteins in 32 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 1346; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). Plant protein of unknown function (DUF828)3+View
AT5G06700Plant protein of unknown function (DUF828) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). A tbr mutant is impaired in its ability to deposit secondary wall cellulose in specific cell types, most notably in trichomes. FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plant-type cell wall modification, pectin biosynthetic process, cellulose biosynthetic process, secondary cell wall biogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G12060.1); Has 18773 Blast hits to 6666 proteins in 584 species: Archae - 22; Bacteria - 3086; Metazoa - 4181; Fungi - 2776; Plants - 1414; Viruses - 506; Other Eukaryotes - 6788 (source: NCBI BLink).5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR05G30590No description available.A05-View
BR01G36840No description available.A01-View
BR02G04280No description available.A02-View
BR10G24840No description available.A10+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV4G11890No description available.Bvchr4.sca001+View
BV3G15140No description available.Bvchr3.sca009+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G15670No description available.Chr10-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00011G05490No description available.CM3.5_scaffold00011+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G10900No description available.scaffold_3+View
CRU_006G05480No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00018G02060No description available.scaffold00018+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0001G20750No description available.scaffold_1-View
EG0002G30390No description available.scaffold_2+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G36080UPF0095 protein MJ1206 (probable)LG3-View
FV6G26860No description available.LG6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G28845No description available.Gm02+View
GM19G33110No description available.Gm19-View
GM03G30210No description available.Gm03-View
GM09G16780No description available.Gm09+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR02G22380No description available.Chr02+View
GR12G10000No description available.Chr12+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD13G009900No description available.13-View
MD12G005090No description available.12+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME00823G00100No description available.scaffold00823-View
ME06591G00240No description available.scaffold06591+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G093450Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family proteinchr7-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G53380No description available.2-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G09300No description available.scaffold_7-View
PPE_006G05960No description available.scaffold_6-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G01090No description available.Chr01+View
PT06G19390No description available.Chr06-View
PT16G05930No description available.Chr16-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G078910No description available.ch10-View
SL10G080550No description available.ch10-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G022290No description available.chr10-View
ST10G019960No description available.chr10+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G17580No description available.scaffold_5-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G36160No description available.ch6-6-View
TP3G10290No description available.ch3-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV08G09060name=GSVIVG01033480001;chr8-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G42140No description available.5-View


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Gene id
Species
Description
Chromosome
Strand