Anchorpoints

Gene id
CP00056G01000
Organism
Carica papaya

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CP00019G02140No description available.supercontig_19-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G24920No description available.scaffold_8-View
AL4G24270No description available.scaffold_4+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G38080IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink). LAC4 appears to have laccase activity based on enzyme assays performed using lac4 mutants. These mutants also have reduced levels of lignin. LAC4 is expressed in vascular bundles and fibers and likely contributes to lignin biosynthesis, and hence cell wall biosynthesis, there. lac4/irx12 mutants have a mild irregular xylem phenotype. Laccase/Diphenol oxidase family protein2+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR04G22770No description available.A04+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV2G04810No description available.Bvchr2.sca001-View
BV7G05440No description available.Bvchr7.sca021-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G19770No description available.Chr10+View
CL04G07190No description available.Chr4-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00011G01060No description available.CM3.5_scaffold00011-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G19440No description available.scaffold_4+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G25220No description available.scaffold_11-View
EG0002G22810No description available.scaffold_2+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G11060Laccase-4, Precursor (putative)LG6-View
FV3G21890Laccase-4, Precursor (putative)LG3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM18G42520No description available.Gm18+View
GM01G27710No description available.Gm01+View
GM03G14450No description available.Gm03-View
GM14G06760No description available.Gm14-View
GM07G17646No description available.Gm07+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR02G26150No description available.Chr02+View
GR09G09380No description available.Chr09-View
GR03G12460No description available.Chr03-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06512G02710No description available.scaffold06512-View
ME03651G00100No description available.scaffold03651-View
ME03150G00510No description available.scaffold03150-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G015120laccase/diphenol oxidase family proteinchr4+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G27850No description available.scaffold_6+View
PPE_006G00620No description available.scaffold_6-View
PPE_002G23630No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT16G11200No description available.Chr16+View
PT01G24870No description available.Chr01+View
PT09G04250No description available.Chr09+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29610G00240No description available.29610+View
RC29751G00010No description available.29751+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G085090Laccase 1a (AHRD V1 **** B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech10+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G023710Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccasechr10-View
ST09G011640Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccasechr09-View
ST10G027700Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccasechr10-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G02100No description available.scaffold_5-View
TC0010G02510No description available.scaffold_10r-View
TC0009G30120No description available.scaffold_9-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G20400similar to AT2G38080|IRX12 (IRREGULAR XYLEM 12)ch4-6+View
TP6G20610similar to AT5G58910|LAC16 (laccase 16)ch6-6-View


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Gene id
Species
Description
Chromosome
Strand