Anchorpoints
- Gene id
- CP00056G01000
- Organism
- Carica papaya
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00019G02140 | No description available. | supercontig_19 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL8G24920 | No description available. | scaffold_8 | - | View |
AL4G24270 | No description available. | scaffold_4 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G38080 | IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink). LAC4 appears to have laccase activity based on enzyme assays performed using lac4 mutants. These mutants also have reduced levels of lignin. LAC4 is expressed in vascular bundles and fibers and likely contributes to lignin biosynthesis, and hence cell wall biosynthesis, there. lac4/irx12 mutants have a mild irregular xylem phenotype. Laccase/Diphenol oxidase family protein | 2 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR04G22770 | No description available. | A04 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV2G04810 | No description available. | Bvchr2.sca001 | - | View |
BV7G05440 | No description available. | Bvchr7.sca021 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL10G19770 | No description available. | Chr10 | + | View |
CL04G07190 | No description available. | Chr4 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00011G01060 | No description available. | CM3.5_scaffold00011 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G19440 | No description available. | scaffold_4 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0011G25220 | No description available. | scaffold_11 | - | View |
EG0002G22810 | No description available. | scaffold_2 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV6G11060 | Laccase-4, Precursor (putative) | LG6 | - | View |
FV3G21890 | Laccase-4, Precursor (putative) | LG3 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM18G42520 | No description available. | Gm18 | + | View |
GM01G27710 | No description available. | Gm01 | + | View |
GM03G14450 | No description available. | Gm03 | - | View |
GM14G06760 | No description available. | Gm14 | - | View |
GM07G17646 | No description available. | Gm07 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR02G26150 | No description available. | Chr02 | + | View |
GR09G09380 | No description available. | Chr09 | - | View |
GR03G12460 | No description available. | Chr03 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME06512G02710 | No description available. | scaffold06512 | - | View |
ME03651G00100 | No description available. | scaffold03651 | - | View |
ME03150G00510 | No description available. | scaffold03150 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT4G015120 | laccase/diphenol oxidase family protein | chr4 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_006G27850 | No description available. | scaffold_6 | + | View |
PPE_006G00620 | No description available. | scaffold_6 | - | View |
PPE_002G23630 | No description available. | scaffold_2 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT16G11200 | No description available. | Chr16 | + | View |
PT01G24870 | No description available. | Chr01 | + | View |
PT09G04250 | No description available. | Chr09 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29610G00240 | No description available. | 29610 | + | View |
RC29751G00010 | No description available. | 29751 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL10G085090 | Laccase 1a (AHRD V1 **** B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccase | ch10 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST10G023710 | Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase | chr10 | - | View |
ST09G011640 | Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase | chr09 | - | View |
ST10G027700 | Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase | chr10 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0005G02100 | No description available. | scaffold_5 | - | View |
TC0010G02510 | No description available. | scaffold_10r | - | View |
TC0009G30120 | No description available. | scaffold_9 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP4G20400 | similar to AT2G38080|IRX12 (IRREGULAR XYLEM 12) | ch4-6 | + | View |
TP6G20610 | similar to AT5G58910|LAC16 (laccase 16) | ch6-6 | - | View |