Anchorpoints

Gene id
CP00055G00570
Organism
Carica papaya

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CP00036G01860No description available.supercontig_36+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G02360No description available.scaffold_7+View
AL1G24100No description available.scaffold_1+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G22500RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink).1+View
AT4G40070RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 9770 Blast hits to 9744 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2524; Fungi - 782; Plants - 4953; Viruses - 74; Other Eukaryotes - 1437 (source: NCBI BLink).4+View
AT4G38140RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G18650.1); Has 7548 Blast hits to 7531 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1845; Fungi - 600; Plants - 4291; Viruses - 10; Other Eukaryotes - 802 (source: NCBI BLink). RING/U-box superfamily protein4-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00008G01040No description available.scaffold00008-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR08G19440No description available.A08-View
BR07G09410No description available.A07-View
BR10G23030No description available.A10-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G10150No description available.Bvchr1.sca002+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G18810No description available.Chr1-View
CL08G11060No description available.Chr8+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G04150No description available.CM3.5_scaffold00014+View
CM00007G07610No description available.CM3.5_scaffold00007-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G21100No description available.scaffold_1+View
CRU_007G01940No description available.scaffold_7+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00004G02510No description available.scaffold00004+View
CS00059G00540No description available.scaffold00059-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G04350No description available.scaffold_9+View
EG0006G03310No description available.scaffold_6+View
EG0008G38350No description available.scaffold_8-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G21960Probable RING-H2 finger protein ATL5Gscf0513168-View
FV1G24630RING-H2 finger protein ATL5H, Precursor (probable)LG1+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM15G06150No description available.Gm15+View
GM14G35550No description available.Gm14+View
GM11G37850No description available.Gm11-View
GM04G10610No description available.Gm04-View
GM06G10460No description available.Gm06-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G09510No description available.Chr05+View
GR09G23310No description available.Chr09-View
GR07G23570No description available.Chr07+View
GR08G09120No description available.Chr08+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03735G00450No description available.scaffold03735-View
ME08261G00070No description available.scaffold08261-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G086680RING finger proteinchr3-View
MT3G099650RING-H2 zinc finger protein C putativechr3+View
MT5G066250RING-H2 zinc finger proteinchr5-View
MT4G093830RING-H2 zinc finger proteinchr4-View
MT5G064890RING-H2 zinc finger proteinchr5+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G08920Zinc finger, C3HC4 type domain containing protein, expressed E3 ubiquitin-protein ligase Os03g01882003-View
OS09G29310zinc finger, C3HC4 type domain containing protein, expressed9-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G59040No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G07130No description available.Chr05-View
PT05G16090No description available.Chr05-View
PT17G04930No description available.Chr17-View
PT02G10180No description available.Chr02+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29838G00070No description available.29838+View
RC29908G02440No description available.29908+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G074790RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech04+View
SL11G010330RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech11+View
SL01G105610RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G009370RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr11-View
ST04G029880Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04-View
ST01G042760RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr01+View
ST04G028570RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04+View
ST04G011280RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G09010No description available.scaffold_1-View
TC0008G09720No description available.scaffold_8-View
TC0002G12760No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G33070similar to AT5G10380|RING1ch6-6-View
TP1G19980similar to AT1G22500|zinc finger (C3HC4-type RING finger) family proteinch1-1+View
TP7G35780similar to AT4G40070|protein binding / zinc ion bindingch7-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G04050name=GSVIVG01009096001;chr18+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G16760No description available.7-View
ZM02G32050No description available.2-View


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Gene id
Species
Description
Chromosome
Strand