Anchorpoints
- Gene id
- CP00055G00570
- Organism
- Carica papaya
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00036G01860 | No description available. | supercontig_36 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL7G02360 | No description available. | scaffold_7 | + | View |
AL1G24100 | No description available. | scaffold_1 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G22500 | RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink). | 1 | + | View |
AT4G40070 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 9770 Blast hits to 9744 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2524; Fungi - 782; Plants - 4953; Viruses - 74; Other Eukaryotes - 1437 (source: NCBI BLink). | 4 | + | View |
AT4G38140 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G18650.1); Has 7548 Blast hits to 7531 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1845; Fungi - 600; Plants - 4291; Viruses - 10; Other Eukaryotes - 802 (source: NCBI BLink). RING/U-box superfamily protein | 4 | - | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00008G01040 | No description available. | scaffold00008 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR08G19440 | No description available. | A08 | - | View |
BR07G09410 | No description available. | A07 | - | View |
BR10G23030 | No description available. | A10 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV1G10150 | No description available. | Bvchr1.sca002 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL01G18810 | No description available. | Chr1 | - | View |
CL08G11060 | No description available. | Chr8 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00014G04150 | No description available. | CM3.5_scaffold00014 | + | View |
CM00007G07610 | No description available. | CM3.5_scaffold00007 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G21100 | No description available. | scaffold_1 | + | View |
CRU_007G01940 | No description available. | scaffold_7 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00004G02510 | No description available. | scaffold00004 | + | View |
CS00059G00540 | No description available. | scaffold00059 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G04350 | No description available. | scaffold_9 | + | View |
EG0006G03310 | No description available. | scaffold_6 | + | View |
EG0008G38350 | No description available. | scaffold_8 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G21960 | Probable RING-H2 finger protein ATL5G | scf0513168 | - | View |
FV1G24630 | RING-H2 finger protein ATL5H, Precursor (probable) | LG1 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM15G06150 | No description available. | Gm15 | + | View |
GM14G35550 | No description available. | Gm14 | + | View |
GM11G37850 | No description available. | Gm11 | - | View |
GM04G10610 | No description available. | Gm04 | - | View |
GM06G10460 | No description available. | Gm06 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR05G09510 | No description available. | Chr05 | + | View |
GR09G23310 | No description available. | Chr09 | - | View |
GR07G23570 | No description available. | Chr07 | + | View |
GR08G09120 | No description available. | Chr08 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME03735G00450 | No description available. | scaffold03735 | - | View |
ME08261G00070 | No description available. | scaffold08261 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT3G086680 | RING finger protein | chr3 | - | View |
MT3G099650 | RING-H2 zinc finger protein C putative | chr3 | + | View |
MT5G066250 | RING-H2 zinc finger protein | chr5 | - | View |
MT4G093830 | RING-H2 zinc finger protein | chr4 | - | View |
MT5G064890 | RING-H2 zinc finger protein | chr5 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS03G08920 | Zinc finger, C3HC4 type domain containing protein, expressed E3 ubiquitin-protein ligase Os03g0188200 | 3 | - | View |
OS09G29310 | zinc finger, C3HC4 type domain containing protein, expressed | 9 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G59040 | No description available. | scaffold_1 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT05G07130 | No description available. | Chr05 | - | View |
PT05G16090 | No description available. | Chr05 | - | View |
PT17G04930 | No description available. | Chr17 | - | View |
PT02G10180 | No description available. | Chr02 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29838G00070 | No description available. | 29838 | + | View |
RC29908G02440 | No description available. | 29908 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL04G074790 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch04 | + | View |
SL11G010330 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch11 | + | View |
SL01G105610 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch01 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST11G009370 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr11 | - | View |
ST04G029880 | Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr04 | - | View |
ST01G042760 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr01 | + | View |
ST04G028570 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr04 | + | View |
ST04G011280 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr04 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G09010 | No description available. | scaffold_1 | - | View |
TC0008G09720 | No description available. | scaffold_8 | - | View |
TC0002G12760 | No description available. | scaffold_2 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP6G33070 | similar to AT5G10380|RING1 | ch6-6 | - | View |
TP1G19980 | similar to AT1G22500|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | + | View |
TP7G35780 | similar to AT4G40070|protein binding / zinc ion binding | ch7-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G04050 | name=GSVIVG01009096001; | chr18 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM07G16760 | No description available. | 7 | - | View |
ZM02G32050 | No description available. | 2 | - | View |