Anchorpoints

Gene id
CP00013G00250
Organism
Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G19360No description available.scaffold_1+View
AL1G43140No description available.scaffold_1+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G18450actin-related protein 4 actin-related protein 4 (ARP4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: long-day photoperiodism, flowering, chromatin organization, pollen sperm cell differentiation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 13669 Blast hits to 13362 proteins in 2792 species: Archae - 2; Bacteria - 480; Metazoa - 5593; Fungi - 3430; Plants - 1457; Viruses - 2; Other Eukaryotes - 2705 (source: NCBI BLink). Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.1+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00030G02240No description available.CM3.5_scaffold00030-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00035G00560No description available.scaffold00035-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0002G06080No description available.scaffold_2-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G04490No description available.Gm08-View
GM05G35231No description available.Gm05+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT12G06130No description available.Chr12+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30174G03830No description available.30174-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G037980Actin-like protein 6A (AHRD V1 ***- B6TTQ6_MAIZE)%3B contains Interpro domain(s) IPR004000 Actin/actin-likech12+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G16390similar to AT1G18450|ATARP4ch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G05730name=GSVIVG01008255001;chr17+View


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Gene id
Species
Description
Chromosome
Strand