Anchorpoints
- Gene id
- CM00084G00570
- Organism
- Cucumis melo
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00063G00860 | No description available. | CM3.5_scaffold00063 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL4G13660 | No description available. | scaffold_4 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G29140 | pumilio 3 (PUM3); FUNCTIONS IN: RNA binding, binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 1 (TAIR:AT2G29200.1); Has 3920 Blast hits to 2027 proteins in 241 species: Archae - 0; Bacteria - 8; Metazoa - 815; Fungi - 1344; Plants - 871; Viruses - 0; Other Eukaryotes - 882 (source: NCBI BLink). pumilio 3 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | 2 | + | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00012G02470 | No description available. | scaffold00012 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR04G17030 | No description available. | A04 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV7G06190 | No description available. | Bvchr7.sca021 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL02G20220 | No description available. | Chr2 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00081G01140 | No description available. | supercontig_81 | - | View |
CP00001G04210 | No description available. | supercontig_1 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G09980 | No description available. | scaffold_4 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00014G00100 | No description available. | scaffold00014 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0002G18440 | No description available. | scaffold_2 | - | View |
EG0010G15210 | No description available. | scaffold_10 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV7G25920 | Pumilio homolog 2 (Pumilio-2) (probable) | LG7 | - | View |
FV3G29190 | Pumilio homolog 2 (Pumilio-2) (similar to) | LG3 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM12G06430 | No description available. | Gm12 | - | View |
GM15G04060 | No description available. | Gm15 | - | View |
GM11G14500 | No description available. | Gm11 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR01G11200 | No description available. | Chr01 | + | View |
GR03G12920 | No description available. | Chr03 | - | View |
GR09G09720 | No description available. | Chr09 | - | View |
GR04G00540 | No description available. | Chr04 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD11G007530 | No description available. | 11 | - | View |
MD03G006380 | No description available. | 3 | - | View |
MD01G010520 | No description available. | 1 | - | View |
MD01G012540 | No description available. | 1 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME07991G00820 | No description available. | scaffold07991 | + | View |
ME06916G00410 | No description available. | scaffold06916 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT5G080390 | pumilio-family RNA-binding repeatprotein | chr5 | + | View |
MT2G097670 | pumilio Mpt5 protein C putative | chr2 | + | View |
MT4G064670 | pumilio Mpt5 protein C putative | chr4 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_002G22950 | No description available. | scaffold_2 | + | View |
PPE_006G07070 | No description available. | scaffold_6 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT01G24340 | No description available. | Chr01 | + | View |
PT08G05830 | No description available. | Chr08 | + | View |
PT09G03490 | No description available. | Chr09 | + | View |
PT10G20110 | No description available. | Chr10 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL06G076340 | mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD)%3B contains Interpro domain(s) IPR011989 Armadillo-like helical | ch06 | + | View |
SL06G005670 | mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD)%3B contains Interpro domain(s) IPR011989 Armadillo-like helical | ch06 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST06G005090 | mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical | chr06 | + | View |
ST06G032150 | mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical | chr06 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0009G31190 | No description available. | scaffold_9 | - | View |
TC0010G03540 | No description available. | scaffold_10r | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP4G11960 | similar to AT2G29190|APUM2 (Arabidopsis Pumilio 2) | ch4-6 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV06G03220 | name=GSVIVG01024919001; | chr6 | + | View |