Anchorpoints
- Gene id
- CM00029G00790
- Organism
- Cucumis melo
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00001G07140 | No description available. | CM3.5_scaffold00001 | - | View |
CM00014G02710 | No description available. | CM3.5_scaffold00014 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL2G23860 | No description available. | scaffold_2 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G74990 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19310.1); Has 4144 Blast hits to 4137 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 2459; Fungi - 476; Plants - 747; Viruses - 18; Other Eukaryotes - 444 (source: NCBI BLink). | 1 | - | View |
AT1G19310 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink). RING/U-box superfamily protein | 1 | - | View |
AT4G27470 | RING membrane-anchor 3 Encodes a RING finger E3 ubiquitin ligase. RING membrane-anchor 3 (RMA3); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 1 (TAIR:AT4G03510.2); Has 2828 Blast hits to 2826 proteins in 265 species: Archae - 0; Bacteria - 0; Metazoa - 1348; Fungi - 459; Plants - 695; Viruses - 22; Other Eukaryotes - 304 (source: NCBI BLink). | 4 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR03G49700 | No description available. | A03 | + | View |
BR01G17720 | No description available. | A01 | + | View |
BR06G13840 | No description available. | A06 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL08G15040 | No description available. | Chr8 | + | View |
CL11G12080 | No description available. | Chr11 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00080G00520 | No description available. | supercontig_80 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_002G20560 | No description available. | scaffold_2 | - | View |
CRU_007G12590 | No description available. | scaffold_7 | - | View |
CRU_001G18100 | No description available. | scaffold_1 | - | View |
CRU_008G13750 | No description available. | scaffold_8 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00012G00050 | No description available. | scaffold00012 | + | View |
CS00010G03080 | No description available. | scaffold00010 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0004G05010 | No description available. | scaffold_4 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM13G24840 | No description available. | Gm13 | + | View |
GM15G07990 | No description available. | Gm15 | - | View |
GM12G23290 | No description available. | Gm12 | - | View |
GM04G03680 | No description available. | Gm04 | + | View |
GM06G03760 | No description available. | Gm06 | + | View |
GM13G31330 | No description available. | Gm13 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR09G39070 | No description available. | Chr09 | + | View |
GR09G17000 | No description available. | Chr09 | + | View |
GR02G07150 | No description available. | Chr02 | + | View |
GR02G12970 | No description available. | Chr02 | + | View |
GR11G02750 | No description available. | Chr11 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD08G003270 | No description available. | 8 | + | View |
MD03G019740 | No description available. | 3 | - | View |
MD11G022170 | No description available. | 11 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME03741G01070 | No description available. | scaffold03741 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT1G021895 | zinc finger C C3HC4 type (RING finger) protein | chr1 | - | View |
MT4G088870 | E3 ubiquitin-protein ligase RMA1H1-like protein | chr4 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_004G04370 | No description available. | scaffold_4 | - | View |
PPE_004G17590 | No description available. | scaffold_4 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT11G12080 | No description available. | Chr11 | + | View |
PT11G05180 | No description available. | Chr11 | - | View |
PT01G40160 | No description available. | Chr01 | + | View |
PT04G04270 | No description available. | Chr04 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29983G00990 | No description available. | 29983 | + | View |
RC29851G00490 | No description available. | 29851 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL02G078320 | RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch02 | + | View |
SL07G063200 | RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch07 | + | View |
SL12G013800 | RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch12 | - | View |
SL10G006960 | RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch10 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST02G021150 | RING finger protein 5 (AHRD V1 **-- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr02 | + | View |
ST07G024010 | RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr07 | - | View |
ST10G007180 | RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr10 | - | View |
ST12G005620 | E3 ubiquitin-protein ligase RMA1 (AHRD V1 *-*- RMA1_ARATH) | chr12 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0006G18410 | No description available. | scaffold_6 | + | View |
TC0002G17380 | No description available. | scaffold_2 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G30120 | similar to AT1G74990|zinc finger (C3HC4-type RING finger) family protein | ch5-7 | - | View |
TP1G17210 | similar to AT1G19310|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV19G03120 | name=GSVIVG01014361001; | chr19 | + | View |