Anchorpoints

Gene id
CM00029G00790
Organism
Cucumis melo

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CM00001G07140No description available.CM3.5_scaffold00001-View
CM00014G02710No description available.CM3.5_scaffold00014-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G23860No description available.scaffold_2-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G74990RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19310.1); Has 4144 Blast hits to 4137 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 2459; Fungi - 476; Plants - 747; Viruses - 18; Other Eukaryotes - 444 (source: NCBI BLink).1-View
AT1G19310RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink). RING/U-box superfamily protein1-View
AT4G27470RING membrane-anchor 3 Encodes a RING finger E3 ubiquitin ligase. RING membrane-anchor 3 (RMA3); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 1 (TAIR:AT4G03510.2); Has 2828 Blast hits to 2826 proteins in 265 species: Archae - 0; Bacteria - 0; Metazoa - 1348; Fungi - 459; Plants - 695; Viruses - 22; Other Eukaryotes - 304 (source: NCBI BLink).4+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G49700No description available.A03+View
BR01G17720No description available.A01+View
BR06G13840No description available.A06-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL08G15040No description available.Chr8+View
CL11G12080No description available.Chr11+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00080G00520No description available.supercontig_80-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G20560No description available.scaffold_2-View
CRU_007G12590No description available.scaffold_7-View
CRU_001G18100No description available.scaffold_1-View
CRU_008G13750No description available.scaffold_8-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00012G00050No description available.scaffold00012+View
CS00010G03080No description available.scaffold00010-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0004G05010No description available.scaffold_4+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM13G24840No description available.Gm13+View
GM15G07990No description available.Gm15-View
GM12G23290No description available.Gm12-View
GM04G03680No description available.Gm04+View
GM06G03760No description available.Gm06+View
GM13G31330No description available.Gm13+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G39070No description available.Chr09+View
GR09G17000No description available.Chr09+View
GR02G07150No description available.Chr02+View
GR02G12970No description available.Chr02+View
GR11G02750No description available.Chr11-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD08G003270No description available.8+View
MD03G019740No description available.3-View
MD11G022170No description available.11+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03741G01070No description available.scaffold03741+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G021895zinc finger C C3HC4 type (RING finger) proteinchr1-View
MT4G088870E3 ubiquitin-protein ligase RMA1H1-like proteinchr4+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_004G04370No description available.scaffold_4-View
PPE_004G17590No description available.scaffold_4+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT11G12080No description available.Chr11+View
PT11G05180No description available.Chr11-View
PT01G40160No description available.Chr01+View
PT04G04270No description available.Chr04-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29983G00990No description available.29983+View
RC29851G00490No description available.29851-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G078320RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech02+View
SL07G063200RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech07+View
SL12G013800RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech12-View
SL10G006960RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech10-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G021150RING finger protein 5 (AHRD V1 **-- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr02+View
ST07G024010RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr07-View
ST10G007180RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr10-View
ST12G005620E3 ubiquitin-protein ligase RMA1 (AHRD V1 *-*- RMA1_ARATH)chr12+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0006G18410No description available.scaffold_6+View
TC0002G17380No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G30120similar to AT1G74990|zinc finger (C3HC4-type RING finger) family proteinch5-7-View
TP1G17210similar to AT1G19310|zinc finger (C3HC4-type RING finger) family proteinch1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV19G03120name=GSVIVG01014361001;chr19+View


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Gene id
Species
Description
Chromosome
Strand