Anchorpoints

Gene id
CM00011G02710
Organism
Cucumis melo

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G23440No description available.scaffold_5-View
AL4G22880No description available.scaffold_4-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G37220RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29 (TAIR:AT3G53460.3); Has 997478 Blast hits to 497195 proteins in 22066 species: Archae - 21542; Bacteria - 603238; Metazoa - 188798; Fungi - 28200; Plants - 60491; Viruses - 70820; Other Eukaryotes - 24389 (source: NCBI BLink). Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.2-View
AT3G53460chloroplast RNA-binding protein 29 (CP29); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1). Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast. chloroplast RNA-binding protein 293-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR05G08000No description available.A05+View
BR04G22170No description available.A04-View
BR03G18400No description available.A03-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G18270No description available.Chr10+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G18530No description available.scaffold_4-View
CRU_005G18810No description available.scaffold_5-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G4898029 kDa ribonucleoprotein A, chloroplastic, Precursor (similar to)LG6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM13G20830No description available.Gm13+View
GM10G06620No description available.Gm10+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G41690No description available.Chr09+View
GR06G16630No description available.Chr06+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ5G011620No description available.chr5+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06816G00110No description available.scaffold06816-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G064230RNA-binding (RRM/RBD/RNP motif) family proteinchr1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G24470No description available.scaffold_6+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT16G09070No description available.Chr16-View
PT06G12720No description available.Chr06+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30078G01140No description available.30078+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G086150Single-stranded DNA binding protein (AHRD V1 **-* Q8W214_SOLTU)%3B contains Interpro domain(s) IPR000504 RNA recognition motif%2C RNP-1ch10-View
SL09G007850RNA-binding protein (AHRD V1 **-* C6F119_SOYBN)%3B contains Interpro domain(s) IPR000504 RNA recognition motif%2C RNP-1ch09-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G028580RNA-binding protein (AHRD V1 **** Q8SMH8_PERAE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1chr10+View
ST09G007400RNA-binding protein (AHRD V1 **-* C6F119_SOYBN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1chr09-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G05880No description available.scaffold_5-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G08880similar to AT3G53460|CP29ch5-1+View
TP4G19540similar to AT2G37220|29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putativech4-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV08G02960name=GSVIVG01025697001;chr8+View


Download

Gene id
Species
Description
Chromosome
Strand