Anchorpoints
- Gene id
- CM00011G02710
- Organism
- Cucumis melo
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL5G23440 | No description available. | scaffold_5 | - | View |
AL4G22880 | No description available. | scaffold_4 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G37220 | RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29 (TAIR:AT3G53460.3); Has 997478 Blast hits to 497195 proteins in 22066 species: Archae - 21542; Bacteria - 603238; Metazoa - 188798; Fungi - 28200; Plants - 60491; Viruses - 70820; Other Eukaryotes - 24389 (source: NCBI BLink). Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | 2 | - | View |
AT3G53460 | chloroplast RNA-binding protein 29 (CP29); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1). Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast. chloroplast RNA-binding protein 29 | 3 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR05G08000 | No description available. | A05 | + | View |
BR04G22170 | No description available. | A04 | - | View |
BR03G18400 | No description available. | A03 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL10G18270 | No description available. | Chr10 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G18530 | No description available. | scaffold_4 | - | View |
CRU_005G18810 | No description available. | scaffold_5 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV6G48980 | 29 kDa ribonucleoprotein A, chloroplastic, Precursor (similar to) | LG6 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM13G20830 | No description available. | Gm13 | + | View |
GM10G06620 | No description available. | Gm10 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR09G41690 | No description available. | Chr09 | + | View |
GR06G16630 | No description available. | Chr06 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ5G011620 | No description available. | chr5 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME06816G00110 | No description available. | scaffold06816 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT1G064230 | RNA-binding (RRM/RBD/RNP motif) family protein | chr1 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_006G24470 | No description available. | scaffold_6 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT16G09070 | No description available. | Chr16 | - | View |
PT06G12720 | No description available. | Chr06 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30078G01140 | No description available. | 30078 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL10G086150 | Single-stranded DNA binding protein (AHRD V1 **-* Q8W214_SOLTU)%3B contains Interpro domain(s) IPR000504 RNA recognition motif%2C RNP-1 | ch10 | - | View |
SL09G007850 | RNA-binding protein (AHRD V1 **-* C6F119_SOYBN)%3B contains Interpro domain(s) IPR000504 RNA recognition motif%2C RNP-1 | ch09 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST10G028580 | RNA-binding protein (AHRD V1 **** Q8SMH8_PERAE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 | chr10 | + | View |
ST09G007400 | RNA-binding protein (AHRD V1 **-* C6F119_SOYBN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 | chr09 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0005G05880 | No description available. | scaffold_5 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G08880 | similar to AT3G53460|CP29 | ch5-1 | + | View |
TP4G19540 | similar to AT2G37220|29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | ch4-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV08G02960 | name=GSVIVG01025697001; | chr8 | + | View |