Anchorpoints

Gene id
CM00001G00880
Organism
Cucumis melo

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G27570No description available.scaffold_8+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G61380Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization. CCT motif -containing response regulator protein TIMING OF CAB EXPRESSION 1 (TOC1); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 3 (TAIR:AT5G60100.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G40900No description available.A03+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G00460No description available.Bvchr5.sca022+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL04G11890No description available.Chr4-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00013G02840No description available.supercontig_13-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_008G21460No description available.scaffold_8+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0002G04630No description available.scaffold_2+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G12830Two-component response regulator-like APRR1 (probable)LG5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM04G33110No description available.Gm04-View
GM17G11040No description available.Gm17+View
GM06G21120No description available.Gm06+View
GM05G00880No description available.Gm05-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G09830No description available.Chr03+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD06G016020No description available.6+View
MD14G019470No description available.14+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME12794G02390No description available.scaffold12794-View
ME08359G02060No description available.scaffold08359+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G037390timing of cab expression 1/PRR response regulatorchr3-View
MT4G108880two-component response regulator-like APRR7 proteinchr4+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G20180No description available.scaffold_5+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT15G06190No description available.Chr15+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30138G02120No description available.30138+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G069690Pseudo response regulator (AHRD V1 **** B9N4C8_POPTR)%3B contains Interpro domain(s) IPR001789 Signal transduction response regulator%2C receiver regionch06-View
SL03G115770Timing of CAB expression-likech03-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G029250Pseudo response regulator (AHRD V1 **** B9N4C8_POPTR); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver regionchr03-View
ST06G026690Pseudo response regulator (AHRD V1 **** B9N4C8_POPTR); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver regionchr06-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G09620No description available.scaffold_3+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G24590similar to AT5G61380|TOC1 (TIMING OF CAB EXPRESSION 1)ch2-4+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G03400name=GSVIVG01007970001;chr17+View


Download

Gene id
Species
Description
Chromosome
Strand