Anchorpoints

Gene id
CL06G15490
Organism
Citrullus lanatus

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G19360No description available.scaffold_1+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G18450actin-related protein 4 actin-related protein 4 (ARP4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: long-day photoperiodism, flowering, chromatin organization, pollen sperm cell differentiation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 13669 Blast hits to 13362 proteins in 2792 species: Archae - 2; Bacteria - 480; Metazoa - 5593; Fungi - 3430; Plants - 1457; Viruses - 2; Other Eukaryotes - 2705 (source: NCBI BLink). Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.1+View
AT1G73910Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. actin-related proteins 4A actin-related proteins 4A (ARP4A); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin-related protein 4 (TAIR:AT1G18450.1); Has 8295 Blast hits to 8286 proteins in 1571 species: Archae - 0; Bacteria - 4; Metazoa - 4071; Fungi - 1608; Plants - 922; Viruses - 2; Other Eukaryotes - 1688 (source: NCBI BLink).1+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G05170No description available.Bvchr5.sca014-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00030G02240No description available.CM3.5_scaffold00030-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G17270No description available.scaffold_1+View
CRU_002G19510No description available.scaffold_2+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00035G00560No description available.scaffold00035-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0002G06080No description available.scaffold_2-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G04490No description available.Gm08-View
GM05G35231No description available.Gm05+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06446G00230No description available.scaffold06446-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30174G03830No description available.30174-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G037980Actin-like protein 6A (AHRD V1 ***- B6TTQ6_MAIZE)%3B contains Interpro domain(s) IPR004000 Actin/actin-likech12+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G29110similar to AT1G18450|ATARP4ch5-7+View
TP1G16390similar to AT1G18450|ATARP4ch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G05730name=GSVIVG01008255001;chr17+View


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