Anchorpoints

Gene id
CL02G20900
Organism
Citrullus lanatus

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G13780No description available.scaffold_5-View
AL8G26410No description available.scaffold_8+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G60170RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1). RNA binding (RRM/RBD/RNP motifs) family protein5+View
AT3G45630RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1); Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0; Bacteria - 612; Metazoa - 421; Fungi - 369; Plants - 161; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink). RNA binding (RRM/RBD/RNP motifs) family protein3-View
AT2G28540RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 940 Blast hits to 717 proteins in 219 species: Archae - 0; Bacteria - 26; Metazoa - 247; Fungi - 180; Plants - 143; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink). RNA binding (RRM/RBD/RNP motifs) family protein2+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G18850No description available.A06+View
BR04G16590No description available.A04+View
BR03G10130No description available.A03-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00082G00480No description available.CM3.5_scaffold00082+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00139G00440No description available.supercontig_139-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G09300No description available.scaffold_4+View
CRU_005G10770No description available.scaffold_5-View
CRU_008G20300No description available.scaffold_8+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00014G01550No description available.scaffold00014-View
CS00115G00020No description available.scaffold00115-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0002G19720No description available.scaffold_2-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM10G05590No description available.Gm10-View
GM12G07791No description available.Gm12+View
GM15G04950No description available.Gm15-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G10530No description available.Chr01+View
GR09G10440No description available.Chr09-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ5G010300No description available.chr5-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD11G009460No description available.11-View
MD03G008080No description available.3-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03750G00500No description available.scaffold03750-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G066970RNA-binding (RRM/RBD/RNP motif) family protein C putativechr1+View
MT4G061180RNA-binding (RRM/RBD/RNP motif) family proteinchr4+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G25050No description available.scaffold_6+View
PPE_006G08980No description available.scaffold_6-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT16G08470No description available.Chr16-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29805G00240No description available.29805+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G072590CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT)%3B contains Interpro domain(s) IPR003954 RNA recognition%2C region 1ch11+View
SL06G005190CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT)%3B contains Interpro domain(s) IPR003954 RNA recognition%2C region 1ch06+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G029530CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- E2AHI7_9HYME); contains Interpro domain(s) IPR003954 RNA recognition, region 1chr11+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G05100No description available.scaffold_5-View
TC0009G33010No description available.scaffold_9-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G11360similar to AT2G28540|nucleic acid binding / nucleotide binding / protein binding / zinc ion bindingch4-6+View
TP5G15830similar to AT3G45630|RNA recognition motif (RRM)-containing proteinch5-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G04660name=GSVIVG01025102001;chr6+View
VV08G01780name=GSVIVG01025550001;chr8+View


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Gene id
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Description
Chromosome
Strand