Anchorpoints

Gene id
BR09G39500
Organism
Brassica rapa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BR04G26270No description available.A04-View
BR03G21750No description available.A03+View
BR05G03800No description available.A05+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G31480No description available.scaffold_4-View
AL5G30440No description available.scaffold_5-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G59850Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43870.1); Has 4315 Blast hits to 4302 proteins in 546 species: Archae - 4; Bacteria - 1265; Metazoa - 14; Fungi - 1413; Plants - 1493; Viruses - 2; Other Eukaryotes - 124 (source: NCBI BLink).3-View
AT2G43860Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43870.1); Has 4137 Blast hits to 4117 proteins in 495 species: Archae - 10; Bacteria - 1220; Metazoa - 14; Fungi - 1275; Plants - 1494; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).2-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00066G01300No description available.scaffold00066+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV3G14520No description available.Bvchr3.sca006-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G25420No description available.scaffold_4-View
CRU_005G25180No description available.scaffold_5-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0001G03380No description available.scaffold_1-View
EG0008G02310No description available.scaffold_8-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G02360Polygalacturonase (PG), Precursor (similar to)LG1-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G66710polygalacturonase, putative, expressed1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G28540No description available.scaffold_7-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT07G14410No description available.Chr07-View
PT17G00350No description available.Chr17+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G014540Polygalacturonase (AHRD V1 ***- Q1A230_PRUDO)%3B contains Interpro domain(s) IPR012334 Pectin lyase foldch08-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G010390Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase foldchr08-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G25940similar to AT2G43860|polygalacturonase, putative / pectinase, putativech4-6-View
TP5G03280similar to AT3G59850|polygalacturonase, putative / pectinase, putativech5-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV05G13960name=GSVIVG01038241001;chr5-View


Download

Gene id
Species
Description
Chromosome
Strand