Anchorpoints
- Gene id
- BR09G39500
- Organism
- Brassica rapa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR04G26270 | No description available. | A04 | - | View |
BR03G21750 | No description available. | A03 | + | View |
BR05G03800 | No description available. | A05 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL4G31480 | No description available. | scaffold_4 | - | View |
AL5G30440 | No description available. | scaffold_5 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G59850 | Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43870.1); Has 4315 Blast hits to 4302 proteins in 546 species: Archae - 4; Bacteria - 1265; Metazoa - 14; Fungi - 1413; Plants - 1493; Viruses - 2; Other Eukaryotes - 124 (source: NCBI BLink). | 3 | - | View |
AT2G43860 | Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43870.1); Has 4137 Blast hits to 4117 proteins in 495 species: Archae - 10; Bacteria - 1220; Metazoa - 14; Fungi - 1275; Plants - 1494; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | 2 | - | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00066G01300 | No description available. | scaffold00066 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV3G14520 | No description available. | Bvchr3.sca006 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G25420 | No description available. | scaffold_4 | - | View |
CRU_005G25180 | No description available. | scaffold_5 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0001G03380 | No description available. | scaffold_1 | - | View |
EG0008G02310 | No description available. | scaffold_8 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV1G02360 | Polygalacturonase (PG), Precursor (similar to) | LG1 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS01G66710 | polygalacturonase, putative, expressed | 1 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_007G28540 | No description available. | scaffold_7 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT07G14410 | No description available. | Chr07 | - | View |
PT17G00350 | No description available. | Chr17 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL08G014540 | Polygalacturonase (AHRD V1 ***- Q1A230_PRUDO)%3B contains Interpro domain(s) IPR012334 Pectin lyase fold | ch08 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST08G010390 | Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase fold | chr08 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP4G25940 | similar to AT2G43860|polygalacturonase, putative / pectinase, putative | ch4-6 | - | View |
TP5G03280 | similar to AT3G59850|polygalacturonase, putative / pectinase, putative | ch5-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV05G13960 | name=GSVIVG01038241001; | chr5 | - | View |