Anchorpoints
- Gene id
- BR09G30520
- Organism
- Brassica rapa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR07G26770 | No description available. | A07 | + | View |
BR07G08530 | No description available. | A07 | + | View |
BR07G22080 | No description available. | A07 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G26000 | No description available. | scaffold_1 | - | View |
AL2G06240 | No description available. | scaffold_2 | - | View |
AL6G14830 | No description available. | scaffold_6 | - | View |
AL2G18320 | No description available. | scaffold_2 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G27220 | paired amphipathic helix repeat-containing protein paired amphipathic helix repeat-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27250.1); Has 833 Blast hits to 732 proteins in 188 species: Archae - 0; Bacteria - 52; Metazoa - 196; Fungi - 169; Plants - 372; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | 1 | + | View |
AT1G70030 | Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1); Has 1404 Blast hits to 650 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 520; Plants - 290; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). Paired amphipathic helix (PAH2) superfamily protein | 1 | + | View |
AT1G24190 | Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19. SIN3-like 3 SIN3-like 3 (SNL3); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: negative regulation of transcription, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1); Has 3268 Blast hits to 1788 proteins in 336 species: Archae - 19; Bacteria - 223; Metazoa - 1240; Fungi - 789; Plants - 447; Viruses - 29; Other Eukaryotes - 521 (source: NCBI BLink). | 1 | - | View |
AT1G59890 | SIN3-like 5 SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1). | 1 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV6G03940 | No description available. | Bvchr6.sca028 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL05G25830 | No description available. | Chr5 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00016G03560 | No description available. | CM3.5_scaffold00016 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00005G03120 | No description available. | supercontig_5 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_002G15770 | No description available. | scaffold_2 | + | View |
CRU_002G05090 | No description available. | scaffold_2 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00003G03310 | No description available. | scaffold00003 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G15790 | No description available. | scaffold_9 | - | View |
EG0002G27980 | No description available. | scaffold_2 | - | View |
EG0010G18750 | No description available. | scaffold_10 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV4G22620 | Paired amphipathic helix protein Sin3 (AtSin3) (putative) | LG4 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM19G01920 | No description available. | Gm19 | - | View |
GM02G03060 | No description available. | Gm02 | + | View |
GM18G17214 | No description available. | Gm18 | + | View |
GM08G40390 | No description available. | Gm08 | - | View |
GM01G04492 | No description available. | Gm01 | - | View |
GM13G04790 | No description available. | Gm13 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR05G18780 | No description available. | Chr05 | - | View |
GR12G05820 | No description available. | Chr12 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD16G004640 | No description available. | 16 | + | View |
MD13G005780 | No description available. | 13 | + | View |
MD09G002860 | No description available. | 9 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME04209G00340 | No description available. | scaffold04209 | + | View |
ME11495G01020 | No description available. | scaffold11495 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_003G25470 | No description available. | scaffold_3 | + | View |
PPE_001G27360 | No description available. | scaffold_1 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT10G03870 | No description available. | Chr10 | - | View |
PT08G19220 | No description available. | Chr08 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29822G00990 | No description available. | 29822 | - | View |
RC29736G00910 | No description available. | 29736 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL02G067570 | Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1)%3B contains Interpro domain(s) IPR013194 Histone deacetylase interacting | ch02 | + | View |
SL02G087360 | Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1)%3B contains Interpro domain(s) IPR013194 Histone deacetylase interacting | ch02 | - | View |
SL05G006540 | Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1)%3B contains Interpro domain(s) IPR013194 Histone deacetylase interacting | ch05 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST02G013440 | Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting | chr02 | + | View |
ST05G011890 | Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting | chr05 | + | View |
ST02G035470 | Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR003822 Paired amphipathic helix | chr02 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0002G23810 | No description available. | scaffold_2 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G25130 | similar to AT1G70060|SNL4 (SIN3-LIKE 4) | ch5-6 | + | View |
TP1G21540 | similar to AT1G27240|paired amphipathic helix repeat-containing protein | ch1-1 | - | View |
TP2G04710 | similar to AT1G59890|SNL5 (SIN3-LIKE 5) | ch2-2 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV01G13190 | name=GSVIVG01020136001; | chr1 | - | View |