Anchorpoints

Gene id
BR09G30520
Organism
Brassica rapa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BR07G26770No description available.A07+View
BR07G08530No description available.A07+View
BR07G22080No description available.A07-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G26000No description available.scaffold_1-View
AL2G06240No description available.scaffold_2-View
AL6G14830No description available.scaffold_6-View
AL2G18320No description available.scaffold_2+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G27220paired amphipathic helix repeat-containing protein paired amphipathic helix repeat-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27250.1); Has 833 Blast hits to 732 proteins in 188 species: Archae - 0; Bacteria - 52; Metazoa - 196; Fungi - 169; Plants - 372; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).1+View
AT1G70030Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1); Has 1404 Blast hits to 650 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 520; Plants - 290; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). Paired amphipathic helix (PAH2) superfamily protein1+View
AT1G24190Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19. SIN3-like 3 SIN3-like 3 (SNL3); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: negative regulation of transcription, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1); Has 3268 Blast hits to 1788 proteins in 336 species: Archae - 19; Bacteria - 223; Metazoa - 1240; Fungi - 789; Plants - 447; Viruses - 29; Other Eukaryotes - 521 (source: NCBI BLink).1-View
AT1G59890SIN3-like 5 SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1).1+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G03940No description available.Bvchr6.sca028-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G25830No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00016G03560No description available.CM3.5_scaffold00016-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00005G03120No description available.supercontig_5+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G15770No description available.scaffold_2+View
CRU_002G05090No description available.scaffold_2-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00003G03310No description available.scaffold00003-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G15790No description available.scaffold_9-View
EG0002G27980No description available.scaffold_2-View
EG0010G18750No description available.scaffold_10+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV4G22620Paired amphipathic helix protein Sin3 (AtSin3) (putative)LG4-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM19G01920No description available.Gm19-View
GM02G03060No description available.Gm02+View
GM18G17214No description available.Gm18+View
GM08G40390No description available.Gm08-View
GM01G04492No description available.Gm01-View
GM13G04790No description available.Gm13-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G18780No description available.Chr05-View
GR12G05820No description available.Chr12+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD16G004640No description available.16+View
MD13G005780No description available.13+View
MD09G002860No description available.9-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04209G00340No description available.scaffold04209+View
ME11495G01020No description available.scaffold11495+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G25470No description available.scaffold_3+View
PPE_001G27360No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G03870No description available.Chr10-View
PT08G19220No description available.Chr08+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29822G00990No description available.29822-View
RC29736G00910No description available.29736+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G067570Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1)%3B contains Interpro domain(s) IPR013194 Histone deacetylase interactingch02+View
SL02G087360Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1)%3B contains Interpro domain(s) IPR013194 Histone deacetylase interactingch02-View
SL05G006540Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1)%3B contains Interpro domain(s) IPR013194 Histone deacetylase interactingch05-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G013440Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interactingchr02+View
ST05G011890Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interactingchr05+View
ST02G035470Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR003822 Paired amphipathic helixchr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G23810No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G25130similar to AT1G70060|SNL4 (SIN3-LIKE 4)ch5-6+View
TP1G21540similar to AT1G27240|paired amphipathic helix repeat-containing proteinch1-1-View
TP2G04710similar to AT1G59890|SNL5 (SIN3-LIKE 5)ch2-2-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G13190name=GSVIVG01020136001;chr1-View


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Gene id
Species
Description
Chromosome
Strand