PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: BR09G25980
Organism: Brassica rapa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
BR06G30160	No description available.	A06	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G33480	RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G10150.1); Has 8909 Blast hits to 8880 proteins in 293 species: Archae - 0; Bacteria - 9; Metazoa - 2258; Fungi - 649; Plants - 4733; Viruses - 65; Other Eukaryotes - 1195 (source: NCBI BLink). RING/U-box superfamily protein	1	-	View
AT5G42200	RING/U-box superfamily protein RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).	5	+	View
AT4G10150	RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G10160.1); Has 9409 Blast hits to 9387 proteins in 290 species: Archae - 0; Bacteria - 6; Metazoa - 2329; Fungi - 766; Plants - 4947; Viruses - 49; Other Eukaryotes - 1312 (source: NCBI BLink). RING/U-box superfamily protein	4	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_001G30210	No description available.	scaffold_1	-	View
CRU_006G27680	No description available.	scaffold_6	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00009G03330	No description available.	scaffold00009	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0004G13210	No description available.	scaffold_4	+	View
EG0006G34980	No description available.	scaffold_6	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_008G00310	No description available.	scaffold_8	-	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30068G01200	No description available.	30068	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP6G07260	similar to AT4G10150\|zinc finger (C3HC4-type RING finger) family protein	ch6-2	-	View