Anchorpoints
- Gene id
- BR06G39450
- Organism
- Brassica rapa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR08G20050 | No description available. | A08 | + | View |
BR09G44550 | No description available. | A09 | + | View |
BR01G00290 | No description available. | A01 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G20690 | No description available. | scaffold_1 | + | View |
AL7G01060 | No description available. | scaffold_7 | - | View |
AL2G24310 | No description available. | scaffold_2 | + | View |
AL4G00700 | No description available. | scaffold_4 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G19680 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G75400.1); Has 470 Blast hits to 325 proteins in 82 species: Archae - 0; Bacteria - 69; Metazoa - 71; Fungi - 25; Plants - 165; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). | 1 | + | View |
AT4G39140 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 1557 Blast hits to 280 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 44; Plants - 176; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink). | 4 | - | View |
AT2G21500 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G39140.5); Has 279 Blast hits to 254 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 31; Plants - 177; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). RING/U-box superfamily protein | 2 | - | View |
AT1G75400 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19680.1); Has 285 Blast hits to 222 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 19; Plants - 178; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). RING/U-box superfamily protein | 1 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV9G13100 | No description available. | Bvchr9.sca026 | - | View |
BV1G08800 | No description available. | Bvchr1.sca001 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL11G14760 | No description available. | Chr11 | + | View |
CL02G05030 | No description available. | Chr2 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00019G03550 | No description available. | CM3.5_scaffold00019 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G18420 | No description available. | scaffold_1 | + | View |
CRU_002G21010 | No description available. | scaffold_2 | + | View |
CRU_007G00940 | No description available. | scaffold_7 | - | View |
CRU_004G00550 | No description available. | scaffold_4 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G04670 | No description available. | scaffold00002 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G15200 | No description available. | scaffold_6 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM17G37190 | No description available. | Gm17 | + | View |
GM04G01190 | No description available. | Gm04 | - | View |
GM06G01220 | No description available. | Gm06 | - | View |
GM06G03240 | No description available. | Gm06 | - | View |
GM14G07790 | No description available. | Gm14 | - | View |
GM04G03190 | No description available. | Gm04 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR13G03490 | No description available. | Chr13 | - | View |
GR09G19910 | No description available. | Chr09 | - | View |
GR08G03070 | No description available. | Chr08 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME07012G00950 | No description available. | scaffold07012 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT3G112230 | ubiquitin-protein ligase | chr3 | + | View |
MT1G022505 | C3HC4-type RING zinc finger protein | chr1 | + | View |
MT3G117180 | RING/U-box protein | chr3 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT02G03160 | No description available. | Chr02 | - | View |
PT09G12000 | No description available. | Chr09 | + | View |
PT05G23150 | No description available. | Chr05 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G04450 | No description available. | 30170 | + | View |
RC30131G02290 | No description available. | 30131 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL10G054030 | AT2G21500 protein (Fragment) (AHRD V1 **-- B9DHX0_ARATH)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch10 | + | View |
SL01G109910 | AT2G21500 protein (Fragment) (AHRD V1 **-- B9DHX0_ARATH)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-type | ch01 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0002G07660 | No description available. | scaffold_2 | - | View |
TC0008G03190 | No description available. | scaffold_8 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G30540 | similar to AT1G75400|protein binding / zinc ion binding | ch5-7 | + | View |
TP7G36680 | similar to AT4G39140|protein binding / zinc ion binding | ch7-6 | + | View |
TP4G00660 | similar to AT2G21500|protein binding / zinc ion binding | ch4-1 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G09450 | name=GSVIVG01009771001; | chr18 | + | View |