Anchorpoints

Gene id
BR06G39450
Organism
Brassica rapa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BR08G20050No description available.A08+View
BR09G44550No description available.A09+View
BR01G00290No description available.A01-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G20690No description available.scaffold_1+View
AL7G01060No description available.scaffold_7-View
AL2G24310No description available.scaffold_2+View
AL4G00700No description available.scaffold_4-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G19680RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G75400.1); Has 470 Blast hits to 325 proteins in 82 species: Archae - 0; Bacteria - 69; Metazoa - 71; Fungi - 25; Plants - 165; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).1+View
AT4G39140RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 1557 Blast hits to 280 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 44; Plants - 176; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink).4-View
AT2G21500RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G39140.5); Has 279 Blast hits to 254 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 31; Plants - 177; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). RING/U-box superfamily protein2-View
AT1G75400RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19680.1); Has 285 Blast hits to 222 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 19; Plants - 178; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). RING/U-box superfamily protein1+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G13100No description available.Bvchr9.sca026-View
BV1G08800No description available.Bvchr1.sca001-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL11G14760No description available.Chr11+View
CL02G05030No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00019G03550No description available.CM3.5_scaffold00019-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G18420No description available.scaffold_1+View
CRU_002G21010No description available.scaffold_2+View
CRU_007G00940No description available.scaffold_7-View
CRU_004G00550No description available.scaffold_4-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G04670No description available.scaffold00002+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G15200No description available.scaffold_6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G37190No description available.Gm17+View
GM04G01190No description available.Gm04-View
GM06G01220No description available.Gm06-View
GM06G03240No description available.Gm06-View
GM14G07790No description available.Gm14-View
GM04G03190No description available.Gm04-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR13G03490No description available.Chr13-View
GR09G19910No description available.Chr09-View
GR08G03070No description available.Chr08+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07012G00950No description available.scaffold07012+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G112230ubiquitin-protein ligasechr3+View
MT1G022505C3HC4-type RING zinc finger proteinchr1+View
MT3G117180RING/U-box proteinchr3+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G03160No description available.Chr02-View
PT09G12000No description available.Chr09+View
PT05G23150No description available.Chr05+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G04450No description available.30170+View
RC30131G02290No description available.30131+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G054030AT2G21500 protein (Fragment) (AHRD V1 **-- B9DHX0_ARATH)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech10+View
SL01G109910AT2G21500 protein (Fragment) (AHRD V1 **-- B9DHX0_ARATH)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G07660No description available.scaffold_2-View
TC0008G03190No description available.scaffold_8+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G30540similar to AT1G75400|protein binding / zinc ion bindingch5-7+View
TP7G36680similar to AT4G39140|protein binding / zinc ion bindingch7-6+View
TP4G00660similar to AT2G21500|protein binding / zinc ion bindingch4-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G09450name=GSVIVG01009771001;chr18+View


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Gene id
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Description
Chromosome
Strand