PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: BR06G35290
Organism: Brassica rapa

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G01735	RING-finger protein for embryogenesis (RIE1); FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G68070.1); Has 9688 Blast hits to 9662 proteins in 283 species: Archae - 0; Bacteria - 6; Metazoa - 2533; Fungi - 743; Plants - 5052; Viruses - 40; Other Eukaryotes - 1314 (source: NCBI BLink). RING-finger protein for embryogenesis encodes a RING-H2 zinc finger protein essential for seed development.	2	+	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00005G01970	No description available.	CM3.5_scaffold00005	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00002G01820	No description available.	supercontig_2	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_005G00650	No description available.	scaffold_5	+	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0007G15910	No description available.	scaffold_7	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR02G17220	No description available.	Chr02	+	View
GR05G15700	No description available.	Chr05	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD13G001260	No description available.	13	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT08G13490	No description available.	Chr08	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL04G008020	RING finger family protein (AHRD V1 ***- D6RU92_SILLA)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type	ch04	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST02G026820	Ring finger protein 43 (AHRD V1 *--- A3KMI3_MOUSE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type	chr02	-	View
ST04G007750	E3 ubiquitin-protein ligase At4g11680 (AHRD V1 *- RING4_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type	chr04	+	View