PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: BR06G18840
Organism: Brassica rapa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
BR06G16130	No description available.	A06	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL5G13790	No description available.	scaffold_5	+	View
AL1G07490	No description available.	scaffold_1	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G45640	Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro. mitogen-activated protein kinase 3 (MPK3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 6 (TAIR:AT2G43790.1); Has 124285 Blast hits to 122929 proteins in 4636 species: Archae - 100; Bacteria - 13249; Metazoa - 47024; Fungi - 12588; Plants - 30092; Viruses - 485; Other Eukaryotes - 20747 (source: NCBI BLink). mitogen-activated protein kinase 3	3	+	View
AT1G07880	Protein kinase superfamily protein member of MAP Kinase ATMPK13; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), JNK MAP kinase (InterPro:IPR008351), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).	1	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_001G06820	No description available.	scaffold_1	-	View
CRU_005G10780	No description available.	scaffold_5	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR09G10380	No description available.	Chr09	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD11G009410	No description available.	11	-	View
MD03G008040	No description available.	3	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME03750G00430	No description available.	scaffold03750	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_006G08900	No description available.	scaffold_6	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL06G068990	Mitogen-activated protein kinase (AHRD V1 **** A9RAB3_WHEAT)%3B contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	ch06	+	View
SL11G072630	Mitogen-activated protein kinase (AHRD V1 ***- Q8LT15_SOLTU)%3B contains Interpro domain(s) IPR008351 JNK MAP kinase	ch11	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST06G025910	Mitogen-activated protein kinase (AHRD V1 **** A9RAB3_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	chr06	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0009G32930	No description available.	scaffold_9	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP5G15850	similar to AT3G45640\|ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)	ch5-1	-	View
TP1G06560	similar to AT1G07880\|ATMPK13	ch1-1	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV06G04690	name=GSVIVG01025105001;	chr6	-	View