Anchorpoints

Gene id
BR06G11980
Organism
Brassica rapa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BR02G25020No description available.A02+View
BR08G26740No description available.A08+View
BR07G33530No description available.A07+View
BR09G46930No description available.A09+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G17760No description available.scaffold_1-View
AL2G27890No description available.scaffold_2+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G78870UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant's viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B. ubiquitin-conjugating enzyme 35 ubiquitin-conjugating enzyme 35 (UBC35); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: root epidermal cell differentiation, response to cadmium ion, postreplication repair, response to iron ion, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 36 (TAIR:AT1G16890.2); Has 10164 Blast hits to 10157 proteins in 398 species: Archae - 0; Bacteria - 2; Metazoa - 4429; Fungi - 2211; Plants - 1825; Viruses - 23; Other Eukaryotes - 1674 (source: NCBI BLink).1+View
AT1G16890UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. ubiquitin-conjugating enzyme 36 ubiquitin-conjugating enzyme 36 (UBC36); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2).1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00027G00740No description available.CM3.5_scaffold00027-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G24290No description available.scaffold_2+View
CRU_001G15890No description available.scaffold_1-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G09970No description available.scaffold_6-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G18400Ubiquitin carrier protein E2 36 (similar to)LG3-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM12G35790No description available.Gm12-View
GM13G34600No description available.Gm13+View
GM06G33840No description available.Gm06+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G36830No description available.Chr09+View
GR13G17320No description available.Chr13-View
GR07G32660No description available.Chr07-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS06G45000ubiquitin-conjugating enzyme, putative, expressed6+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_004G15990No description available.scaffold_4+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT11G11140No description available.Chr11+View
PT01G39250No description available.Chr01+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G007260Ubiquitin-conjugating enzyme E2 N (AHRD V1 ***- B5XC59_SALSA)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2ch10-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G007940Ubiquitin-conjugating enzyme E2 N (AHRD V1 **** B5XC59_SALSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr10+View
ST07G024670Ubiquitin-conjugating enzyme E2 N (AHRD V1 **** B5XC59_SALSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr07-View
ST07G027770Ubiquitin conjugating enzyme (AHRD V1 **** E9D4Y9_COCPO); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr07-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G33880similar to AT1G78870|UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)ch5-7+View
TP1G15030similar to AT1G78870|UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)ch1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV19G01920name=GSVIVG01014215001;chr19+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G14740No description available.5+View
ZM06G12330No description available.6-View


Download

Gene id
Species
Description
Chromosome
Strand