Anchorpoints

Gene id
BR04G24740
Organism
Brassica rapa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BR09G37680No description available.A09+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G28300No description available.scaffold_4+View
AL5G27470No description available.scaffold_5+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G57080Eukaryotic rpb5 RNA polymerase subunit family protein Non-catalytic subunit unique to Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB5. NRPE5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, D (TAIR:AT2G41340.1); Has 910 Blast hits to 910 proteins in 323 species: Archae - 199; Bacteria - 0; Metazoa - 157; Fungi - 216; Plants - 117; Viruses - 5; Other Eukaryotes - 216 (source: NCBI BLink).3+View
AT2G41340'RNA polymerase II fifth largest subunit, D' (RPB5D); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G57080.1); Has 971 Blast hits to 971 proteins in 339 species: Archae - 231; Bacteria - 0; Metazoa - 155; Fungi - 216; Plants - 119; Viruses - 8; Other Eukaryotes - 242 (source: NCBI BLink). RNA polymerase II fifth largest subunit, D NRPE5-like protein of unknown function; homologous to budding yeast RPB52+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV3G12620No description available.Bvchr3.sca010+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G14080No description available.Chr10-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00011G07190No description available.CM3.5_scaffold00011+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00005G01970No description available.supercontig_5-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G22810No description available.scaffold_4+View
CRU_005G22550No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G33310DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA polymerases I, II, and III subunit ABC1) (probable)LG6+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM03G28510No description available.Gm03-View
GM19G31250No description available.Gm19-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G13330No description available.Chr06-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD14G009460No description available.14-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME08100G00220No description available.scaffold08100-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G090220DNA-directed RNA polymerase IIchr7-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS11G04730DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed11-View
OS12G04510DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed12-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G05870No description available.scaffold_7+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G040170DNA-directed RNA polymerases I (AHRD V1 ***- C1FYH2_PARBD)%3B contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase%2C RPB5 subunitch04+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G14220No description available.scaffold_5-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G23630similar to AT2G41340|RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D)ch4-6+View
TP5G05500similar to AT3G57080|NRPE5ch5-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV08G09950name=GSVIVG01033595001;chr8+View


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