PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: BR02G26370
Organism: Brassica rapa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
BR06G10510	No description available.	A06	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL6G41370	No description available.	scaffold_6	-	View
AL1G15930	No description available.	scaffold_1	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G15100	RING-H2 finger A2A (RHA2A); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: response to salt stress, positive regulation of abscisic acid mediated signaling pathway, regulation of response to osmotic stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger protein 2B (TAIR:AT2G01150.1); Has 8620 Blast hits to 8597 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 2194; Fungi - 672; Plants - 4576; Viruses - 12; Other Eukaryotes - 1166 (source: NCBI BLink). RING-H2 finger A2A Encodes a putative RING-H2 finger protein RHA2a.	1	-	View
AT4G00305	RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: brassinosteroid-responsive RING-H2 (TAIR:AT3G61460.1); Has 6452 Blast hits to 6437 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 1579; Fungi - 466; Plants - 3776; Viruses - 3; Other Eukaryotes - 628 (source: NCBI BLink). RING/U-box superfamily protein	4	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL05G01670	No description available.	Chr5	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_001G14220	No description available.	scaffold_1	-	View
CRU_006G35680	No description available.	scaffold_6	-	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR07G10170	No description available.	Chr07	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP6G00370	similar to AT4G00305\|zinc finger (C3HC4-type RING finger) family protein	ch6-1	+	View