Anchorpoints

Gene id
BR01G21730
Organism
Brassica rapa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BR06G14250No description available.A06-View
BR09G32760No description available.A09+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G20790No description available.scaffold_1-View
AL8G34310No description available.scaffold_8+View
AL5G20700No description available.scaffold_5+View
AL2G24460No description available.scaffold_2-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G51060A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site ACTCTAC) Lateral root primordium (LRP) protein-related STYLISH 1 (STY1); FUNCTIONS IN: protein heterodimerization activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT5G66350.1); Has 244 Blast hits to 244 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 9; Plants - 179; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).3+View
AT1G19790A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence 71-View
AT5G66350SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid. Lateral root primordium (LRP) protein-related5-View
AT1G75520SHI-related sequence 5 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).1-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G16420No description available.Bvchr6.sca002-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G20160No description available.Chr1-View
CL05G19720No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00007G09120No description available.CM3.5_scaffold00007-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00006G01910No description available.supercontig_6+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G16330No description available.scaffold_5+View
CRU_001G18500No description available.scaffold_1-View
CRU_002G21110No description available.scaffold_2-View
CRU_008G27320No description available.scaffold_8+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00017G00530No description available.scaffold00017+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G20080No description available.scaffold_9+View
EG0010G20660No description available.scaffold_10-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G05830No description available.Gm02-View
GM16G24510No description available.Gm16-View
GM01G37590No description available.Gm01-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR10G00680No description available.Chr10+View
GR09G19730No description available.Chr09+View
GR07G19810No description available.Chr07-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD02G012020No description available.2-View
MD12G015230No description available.12-View
MD15G018120No description available.15+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06512G00680No description available.scaffold06512+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G076620zinc finger C LRP1 type proteinchr8+View
MT5G021130transcription factor C putativechr5+View
MT1G023230zinc finger C LRP1 type proteinchr1-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS06G49830SHI, putative, expressed6+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G37970No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G11820No description available.Chr05-View
PT07G01750No description available.Chr07-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G084680Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch02+View
SL04G080970Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch04-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G034360Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr04-View
ST02G027800Short internode related sequence 7 (AHRD V1 **-- D2KC77_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G02360No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G17600similar to AT1G19790|SRS7 (SHI-RELATED SEQUENCE 7)ch1-1-View
TP5G30650similar to AT1G75520|SRS5 (SHI-RELATED SEQUENCE 5)ch5-7-View
TP5G11150similar to AT3G51060|STY1 (STYLISH 1)ch5-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G01250name=GSVIVG01018845001;chr4-View


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