Anchorpoints

Gene id
BR01G13500
Organism
Brassica rapa

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G34030No description available.scaffold_6+View
AL7G18660No description available.scaffold_7+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G23520Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 7771 Blast hits to 7697 proteins in 722 species: Archae - 59; Bacteria - 251; Metazoa - 3251; Fungi - 10; Plants - 1867; Viruses - 134; Other Eukaryotes - 2199 (source: NCBI BLink). Cysteine proteinases superfamily protein4-View
AT4G11310Papain family cysteine protease Papain family cysteine protease; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein myristoylation; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT4G11320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). cysteine proteinase precursor-like protein4+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_006G29060No description available.scaffold_6+View
CRU_007G16830No description available.scaffold_7-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G056000Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA)%3B contains Interpro domain(s) IPR013128 Peptidase C1A%2C papainch12+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G21420similar to AT4G23520|cysteine proteinase, putativech7-4-View
TP6G06120similar to AT4G11320|cysteine proteinase, putativech6-1-View


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Gene id
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Description
Chromosome
Strand