PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: BR00G00150
Organism: Brassica rapa

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL3G13340	No description available.	scaffold_3	+	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G56010	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1) NAC domain containing protein 1 (NAC1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G12977.1); Has 2928 Blast hits to 2921 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2928; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). NAC domain containing protein 1	1	-	View
AT3G12910	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 42 (TAIR:AT2G43000.1); Has 2920 Blast hits to 2915 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2920; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	3	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL09G22800	No description available.	Chr9	-	View
CL02G18680	No description available.	Chr2	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_003G11730	No description available.	scaffold_3	+	View
CRU_001G42430	No description available.	scaffold_1	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM15G40950	No description available.	Gm15	-	View
GM08G18044	No description available.	Gm08	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR02G03670	No description available.	Chr02	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME02477G00030	No description available.	scaffold02477	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_004G13180	No description available.	scaffold_4	+	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30169G01140	No description available.	30169	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST07G027260	NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein	chr07	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP1G41620	similar to AT1G56010\|NAC1	ch1-2	-	View
TP3G11050	similar to AT3G12910\|transcription factor	ch3-1	+	View