Anchorpoints

Gene id
AT5G50320
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G63290Radical SAM superfamily protein CPO3 (At5g63290) has not been characterized per se, but is a homolog of the CPDH/HEMN (see review by Layer et al, 2010). The homolog from cyanobacteria was recently characterized to be a CPDH (see Goto et al, 2010), but not yet from plants. Radical SAM superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Putative oxygen-independent coproporphyrinogen III oxidase (InterPro:IPR004559), HemN, C-terminal (InterPro:IPR010723), Radical SAM (InterPro:IPR007197); Has 10146 Blast hits to 10146 proteins in 2456 species: Archae - 113; Bacteria - 8401; Metazoa - 78; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 1513 (source: NCBI BLink).5-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G29880No description available.scaffold_8-View
AL8G14310No description available.scaffold_8-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G24670No description available.A03-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV0G13090No description available.Bvchr7_un.sca005+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00004G00680No description available.supercontig_4-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_008G23380No description available.scaffold_8-View
CRU_008G10160No description available.scaffold_8-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0002G01190No description available.scaffold_2+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM04G36780No description available.Gm04-View
GM06G18150No description available.Gm06+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G27030No description available.Chr06-View
GR01G06150No description available.Chr01+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME12794G00060No description available.scaffold12794+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G16390No description available.scaffold_5+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT15G09040No description available.Chr15-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30147G04760No description available.30147+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G110910Histone acetyltransferase ELP3 family protein (AHRD V1 **-- Q22HD8_TETTH)%3B contains Interpro domain(s) IPR005910 Histone acetyltransferase ELP3ch03-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G024180Elongator complex histone acetyltransferase subunit Elp3 (AHRD V1 **-- B6K7N9_SCHJY); contains Interpro domain(s) IPR005910 Histone acetyltransferase ELP3chr03+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G12580No description available.scaffold_3-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G12400similar to AT5G50320|ELO3 (ELONGATA 3)ch6-4-View
TP2G26410similar to AT5G63290|coproporphyrinogen oxidase-relatedch2-4-View


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Gene id
Species
Description
Chromosome
Strand