Anchorpoints
- Gene id
- AT5G50320
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT5G63290 | Radical SAM superfamily protein CPO3 (At5g63290) has not been characterized per se, but is a homolog of the CPDH/HEMN (see review by Layer et al, 2010). The homolog from cyanobacteria was recently characterized to be a CPDH (see Goto et al, 2010), but not yet from plants. Radical SAM superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Putative oxygen-independent coproporphyrinogen III oxidase (InterPro:IPR004559), HemN, C-terminal (InterPro:IPR010723), Radical SAM (InterPro:IPR007197); Has 10146 Blast hits to 10146 proteins in 2456 species: Archae - 113; Bacteria - 8401; Metazoa - 78; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 1513 (source: NCBI BLink). | 5 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL8G29880 | No description available. | scaffold_8 | - | View |
AL8G14310 | No description available. | scaffold_8 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR03G24670 | No description available. | A03 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV0G13090 | No description available. | Bvchr7_un.sca005 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00004G00680 | No description available. | supercontig_4 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_008G23380 | No description available. | scaffold_8 | - | View |
CRU_008G10160 | No description available. | scaffold_8 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0002G01190 | No description available. | scaffold_2 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM04G36780 | No description available. | Gm04 | - | View |
GM06G18150 | No description available. | Gm06 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR06G27030 | No description available. | Chr06 | - | View |
GR01G06150 | No description available. | Chr01 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME12794G00060 | No description available. | scaffold12794 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_005G16390 | No description available. | scaffold_5 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT15G09040 | No description available. | Chr15 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30147G04760 | No description available. | 30147 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL03G110910 | Histone acetyltransferase ELP3 family protein (AHRD V1 **-- Q22HD8_TETTH)%3B contains Interpro domain(s) IPR005910 Histone acetyltransferase ELP3 | ch03 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST03G024180 | Elongator complex histone acetyltransferase subunit Elp3 (AHRD V1 **-- B6K7N9_SCHJY); contains Interpro domain(s) IPR005910 Histone acetyltransferase ELP3 | chr03 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0003G12580 | No description available. | scaffold_3 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP6G12400 | similar to AT5G50320|ELO3 (ELONGATA 3) | ch6-4 | - | View |
TP2G26410 | similar to AT5G63290|coproporphyrinogen oxidase-related | ch2-4 | - | View |