Anchorpoints

Gene id
AT5G46780
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G35230Contains a plant-specific VQ motif. Involved in endosperm growth and seed size determination. IKU1 is expressed in the early endosperm and its progenitor, the central cell.IKU1 interacts with MINI3 in the yeast two-hybrid system. VQ motif-containing protein IKU1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of seed growth, endosperm development; LOCATED IN: polar nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G32610.2); Has 32531 Blast hits to 21168 proteins in 1133 species: Archae - 22; Bacteria - 2536; Metazoa - 15453; Fungi - 6059; Plants - 4197; Viruses - 550; Other Eukaryotes - 3714 (source: NCBI BLink).2+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G01390No description available.scaffold_8-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR05G09440No description available.A05-View
BR06G36720No description available.A06-View
BR02G28890No description available.A02+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G04590No description available.Bvchr5.sca007+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL09G11570No description available.Chr9+View
CL10G00500No description available.Chr10-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM01596G01220No description available.CM3.5_scaffold01596-View
CM00021G01600No description available.CM3.5_scaffold00021+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_008G01140No description available.scaffold_8-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0004G18070No description available.scaffold_4+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G36730No description available.Gm08+View
GM01G12940No description available.Gm01+View
GM01G02280No description available.Gm01+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G21650No description available.Chr06-View
GR04G18540No description available.Chr04-View
GR03G18180No description available.Chr03-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G026380No description available.chr2-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G04030No description available.scaffold_5+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G14240No description available.Chr01+View
PT03G09180No description available.Chr03-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G061190Hydroxyproline-rich glycoprotein family protein (AHRD V1 *-*- D7KHM1_ARALY)%3B contains Interpro domain(s) IPR008889 VQch06-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST06G021360No description available.chr06-View
ST08G021310Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7KHM1_ARALY); contains Interpro domain(s) IPR008889 VQchr08-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G22670No description available.scaffold_3+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G11590similar to AT5G46780|VQ motif-containing proteinch2-4+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV02G02290name=GSVIVG01013160001;chr2-View


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Gene id
Species
Description
Chromosome
Strand