Anchorpoints
- Gene id
- AT5G22650
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G27840 | histone deacetylase-related / HD-related HDT4; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: production of siRNA involved in RNA interference; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.2); Has 818 Blast hits to 747 proteins in 183 species: Archae - 0; Bacteria - 171; Metazoa - 199; Fungi - 55; Plants - 177; Viruses - 17; Other Eukaryotes - 199 (source: NCBI BLink). Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39 | 2 | + | View |
AT3G44750 | histone deacetylase 3 histone deacetylase 3 (HDA3); FUNCTIONS IN: histone deacetylase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA mediated transformation, polarity specification of adaxial/abaxial axis; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: histone deacetylase 2B (TAIR:AT5G22650.1); Has 5980 Blast hits to 4690 proteins in 449 species: Archae - 12; Bacteria - 394; Metazoa - 2639; Fungi - 927; Plants - 442; Viruses - 82; Other Eukaryotes - 1484 (source: NCBI BLink). Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots. | 3 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL6G22330 | No description available. | scaffold_6 | + | View |
AL5G12580 | No description available. | scaffold_5 | + | View |
AL4G12270 | No description available. | scaffold_4 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR02G11170 | No description available. | A02 | + | View |
BR10G13580 | No description available. | A10 | - | View |
BR03G09650 | No description available. | A03 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV9G07030 | No description available. | Bvchr9.sca024 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL02G21930 | No description available. | Chr2 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00047G03330 | No description available. | CM3.5_scaffold00047 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_005G09770 | No description available. | scaffold_5 | + | View |
CRU_006G19800 | No description available. | scaffold_6 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00371G00020 | No description available. | scaffold00371 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0010G03710 | No description available. | scaffold_10 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM17G05340 | No description available. | Gm17 | + | View |
GM11G19480 | No description available. | Gm11 | + | View |
GM03G34850 | No description available. | Gm03 | - | View |
GM12G09000 | Histone deacetylase HDT1 | Gm12 | - | View |
GM12G30600 | No description available. | Gm12 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR06G10930 | No description available. | Chr06 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ3G043080 | No description available. | chr3 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD11G011640 | No description available. | 11 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME05859G00250 | No description available. | scaffold05859 | - | View |
ME03569G00050 | No description available. | scaffold03569 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT4G055440 | histone deacetylase HDT2 C putative | chr4 | + | View |
MT2G084815 | histone deacetylase 2a C putative | chr2 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_006G11610 | No description available. | scaffold_6 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT04G18880 | No description available. | Chr04 | + | View |
PT06G11650 | No description available. | Chr06 | + | View |
PT09G14940 | No description available. | Chr09 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29991G00240 | No description available. | 29991 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL11G066840 | Histone deacetylase-like protein (AHRD V1 *-*- Q3HVL4_SOLTU) | ch11 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST11G024650 | Histone deacetylase-like protein-like (AHRD V1 ***- Q2XTD2_SOLTU) | chr11 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0009G28740 | No description available. | scaffold_9 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP6G22690 | similar to AT5G22650|HD2B (HISTONE DEACETYLASE 2B) | ch6-6 | - | View |
TP5G16430 | similar to AT3G44750|HDA3 (HISTONE DEACETYLASE 3) | ch5-1 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV06G08370 | name=GSVIVG01031404001; | chr6 | - | View |