Anchorpoints

Gene id
AT5G22650
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G27840histone deacetylase-related / HD-related HDT4; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: production of siRNA involved in RNA interference; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.2); Has 818 Blast hits to 747 proteins in 183 species: Archae - 0; Bacteria - 171; Metazoa - 199; Fungi - 55; Plants - 177; Viruses - 17; Other Eukaryotes - 199 (source: NCBI BLink). Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p392+View
AT3G44750histone deacetylase 3 histone deacetylase 3 (HDA3); FUNCTIONS IN: histone deacetylase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA mediated transformation, polarity specification of adaxial/abaxial axis; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: histone deacetylase 2B (TAIR:AT5G22650.1); Has 5980 Blast hits to 4690 proteins in 449 species: Archae - 12; Bacteria - 394; Metazoa - 2639; Fungi - 927; Plants - 442; Viruses - 82; Other Eukaryotes - 1484 (source: NCBI BLink). Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots.3+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G22330No description available.scaffold_6+View
AL5G12580No description available.scaffold_5+View
AL4G12270No description available.scaffold_4-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G11170No description available.A02+View
BR10G13580No description available.A10-View
BR03G09650No description available.A03+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G07030No description available.Bvchr9.sca024-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G21930No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00047G03330No description available.CM3.5_scaffold00047+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G09770No description available.scaffold_5+View
CRU_006G19800No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00371G00020No description available.scaffold00371+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0010G03710No description available.scaffold_10-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G05340No description available.Gm17+View
GM11G19480No description available.Gm11+View
GM03G34850No description available.Gm03-View
GM12G09000Histone deacetylase HDT1Gm12-View
GM12G30600No description available.Gm12-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G10930No description available.Chr06-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G043080No description available.chr3+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD11G011640No description available.11+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME05859G00250No description available.scaffold05859-View
ME03569G00050No description available.scaffold03569-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G055440histone deacetylase HDT2 C putativechr4+View
MT2G084815histone deacetylase 2a C putativechr2+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G11610No description available.scaffold_6-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G18880No description available.Chr04+View
PT06G11650No description available.Chr06+View
PT09G14940No description available.Chr09+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29991G00240No description available.29991-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G066840Histone deacetylase-like protein (AHRD V1 *-*- Q3HVL4_SOLTU)ch11-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G024650Histone deacetylase-like protein-like (AHRD V1 ***- Q2XTD2_SOLTU)chr11-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0009G28740No description available.scaffold_9+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G22690similar to AT5G22650|HD2B (HISTONE DEACETYLASE 2B)ch6-6-View
TP5G16430similar to AT3G44750|HDA3 (HISTONE DEACETYLASE 3)ch5-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G08370name=GSVIVG01031404001;chr6-View


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Chromosome
Strand