Anchorpoints

Gene id
AT5G18620
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT3G06400Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2). chromatin-remodeling protein 113+View
AT5G63950chromatin remodeling 24 (CHR24); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 8 (TAIR:AT2G18760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). chromatin remodeling 245-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G30600No description available.scaffold_8-View
AL6G18690No description available.scaffold_6-View
AL3G06510No description available.scaffold_3+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00057G01810No description available.scaffold00057-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G09150No description available.A02-View
BR10G16080No description available.A10+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL06G05120No description available.Chr6-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00016G01310No description available.supercontig_16+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G05610No description available.scaffold_3+View
CRU_006G16490No description available.scaffold_6-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00011G02750No description available.scaffold00011-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV4G12080Putative chromatin-remodeling complex ATPase chain (similar to)LG4+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM07G38050No description available.Gm07-View
GM15G10370No description available.Gm15-View
GM13G28720No description available.Gm13+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G05840No description available.Chr05+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME01551G03120No description available.scaffold01551-View
ME09365G00250No description available.scaffold09365+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G020000chromatin remodeling factor C putativechr2-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G13280No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT13G04850No description available.Chr13-View
PT19G02150No description available.Chr19-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29680G00580No description available.29680-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G054560Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN)%3B contains Interpro domain(s) IPR000330 SNF2-relatedch06+View
SL01G067390Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN)%3B contains Interpro domain(s) IPR000330 SNF2-relatedch01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G010390Chromodomain-helicase-DNA-binding protein 8 (AHRD V1 **-- CHD8_XENTR); contains Interpro domain(s) IPR000330 SNF2-relatedchr02-View
ST06G018310Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-relatedchr06+View
ST01G021440Chromodomain-helicase-DNA-binding protein 1 (AHRD V1 *--* CHD1_CHICK); contains Interpro domain(s) IPR000330 SNF2-relatedchr01+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G25710similar to AT5G18620|CHR17 (CHROMATIN REMODELING FACTOR17)ch6-6+View
TP2G27010similar to AT5G63950|CHR24 (chromatin remodeling 24)ch2-4-View
TP3G05320similar to AT3G06400|CHR11 (CHROMATIN-REMODELING PROTEIN 11)ch3-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV05G03380name=GSVIVG01017791001;chr5-View


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Gene id
Species
Description
Chromosome
Strand