Anchorpoints

Gene id
AT5G15800
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G60910AGAMOUS-like 8 AGAMOUS-like 8 (AGL8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, maintenance of inflorescence meristem identity, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). MADS box gene negatively regulated by APETALA15-View
AT3G02310MADS-box protein, binds K domain of AG in vivo K-box region and MADS-box transcription factor family protein SEPALLATA 2 (SEP2); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1); Has 7363 Blast hits to 7362 proteins in 916 species: Archae - 3; Bacteria - 0; Metazoa - 630; Fungi - 305; Plants - 6350; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).3-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G15630No description available.scaffold_6-View
AL3G01420No description available.scaffold_3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G06610No description available.A03-View
BR10G19400No description available.A10+View
BR05G35670No description available.A05+View
BR01G34870No description available.A01-View
BR06G31530No description available.A06-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL07G17320No description available.Chr7-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00014G02250No description available.supercontig_14+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G01340No description available.scaffold_3-View
CRU_006G13620No description available.scaffold_6-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00015G00360No description available.scaffold00015+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G42060Agamous-like MADS-box protein AGL8 homolog (putative)LG6-View
FV0G03660Floral homeotic protein APETALA 1 (putative)scf0513158-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G27670No description available.Gm08+View
GM13G06730No description available.Gm13+View
GM04G31847No description available.Gm04-View
GM18G50900No description available.Gm18+View
GM19G04320No description available.Gm19+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G20730No description available.Chr01-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G005140No description available.9+View
MD06G016940No description available.6-View
MD14G020330No description available.14+View
MD17G005530No description available.17+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04043G01720No description available.scaffold04043-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G461710MADS-box transcription factor family proteinchr2+View
MT7G016600MADS-box transcription factorchr7+View
MT6G015975MADS-box transcription factorchr6+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G54160OsMADS14 - MADS-box family gene with MIKCc type-box, expressed3-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G22850No description available.scaffold_3-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT17G09970No description available.Chr17+View
PT04G11540No description available.Chr04-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29790G00080No description available.29790+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G065730MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-boxch02-View
SL02G089200MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-boxch02+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G012590MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR); contains Interpro domain(s) IPR002487 Transcription factor, K-boxchr02-View
ST02G033670MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-boxchr02-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G10960No description available.scaffold_3+View
TC0004G11010No description available.scaffold_4+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G01370similar to AT3G02310|SEP2 (SEPALLATA 2)ch3-1-View
TP6G28320similar to AT5G15800|SEP1 (SEPALLATA1)ch6-6+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G16100name=GSVIVG01036549001;chr14-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM03G17160No description available.3-View


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Gene id
Species
Description
Chromosome
Strand