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Functional clusters
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WorkbenchAnchorpoints
- Gene id
- AT5G15790
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT3G02290 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15790.2); Has 5868 Blast hits to 5858 proteins in 250 species: Archae - 0; Bacteria - 2; Metazoa - 1823; Fungi - 365; Plants - 2709; Viruses - 17; Other Eukaryotes - 952 (source: NCBI BLink). RING/U-box superfamily protein | 3 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL6G15620 | No description available. | scaffold_6 | + | View |
| AL3G01400 | No description available. | scaffold_3 | + | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR05G35690 | No description available. | A05 | - | View |
| BR03G06600 | No description available. | A03 | + | View |
| BR10G19410 | No description available. | A10 | - | View |
Beta vulgaris
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BV2G08450 | No description available. | Bvchr2.sca001 | - | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM00051G00940 | No description available. | CM3.5_scaffold00051 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_003G01320 | No description available. | scaffold_3 | + | View |
| CRU_006G13610 | No description available. | scaffold_6 | + | View |
Citrus sinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CS00015G00410 | No description available. | scaffold00015 | - | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV6G42010 | E3 ubiquitin-protein ligase At3g02290 (similar to) | LG6 | + | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM19G04340 | No description available. | Gm19 | - | View |
| GM13G06840 | No description available. | Gm13 | - | View |
| GM08G27730 | No description available. | Gm08 | - | View |
| GM18G50945 | No description available. | Gm18 | - | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR01G20710 | No description available. | Chr01 | + | View |
Lotus japonicus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| LJ2G017980 | No description available. | chr2 | + | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME04043G01700 | No description available. | scaffold04043 | + | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT7G016840 | RING-finger ubiquitin ligase | chr7 | + | View |
| MT6G015980 | RING-finger ubiquitin ligase | chr6 | - | View |
Prunus persica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PPE_003G22810 | No description available. | scaffold_3 | + | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT17G10010 | No description available. | Chr17 | - | View |
| PT04G11480 | No description available. | Chr04 | + | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL02G089240 | Zinc finger family protein (AHRD V1 ***- D7KZF4_ARALY)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch02 | - | View |
| SL02G065720 | RING finger protein 13 (AHRD V1 *-*- RNF13_MOUSE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch02 | + | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST02G012580 | Zinc finger family protein (AHRD V1 **-* D7M7G2_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr02 | + | View |
| ST02G033640 | Zinc finger family protein (AHRD V1 **-* D7KZF4_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr02 | + | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0004G11080 | No description available. | scaffold_4 | - | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP6G28330 | similar to AT5G15790|zinc finger (C3HC4-type RING finger) family protein | ch6-6 | - | View |
| TP3G01350 | similar to AT3G02290|zinc finger (C3HC4-type RING finger) family protein | ch3-1 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV14G16070 | name=GSVIVG01036545001; | chr14 | + | View |