Anchorpoints

Gene id
AT4G38740
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G21130Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink). Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein2-View
AT2G16600rotamase CYP 3 (ROC3); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 16363 Blast hits to 16328 proteins in 2676 species: Archae - 108; Bacteria - 6734; Metazoa - 2930; Fungi - 1383; Plants - 1279; Viruses - 4; Other Eukaryotes - 3925 (source: NCBI BLink). Encodes cytosolic cyclophilin ROC3. rotamase CYP 32+View
AT4G34870belongs to cyclophilin family rotamase cyclophilin 5 rotamase cyclophilin 5 (ROC5); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 16787 Blast hits to 16755 proteins in 2701 species: Archae - 108; Bacteria - 6977; Metazoa - 2940; Fungi - 1375; Plants - 1301; Viruses - 4; Other Eukaryotes - 4082 (source: NCBI BLink).4+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G00600No description available.scaffold_7-View
AL7G06000No description available.scaffold_7-View
AL4G00230No description available.scaffold_4-View
AL3G37150No description available.scaffold_3+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00041G01750No description available.scaffold00041+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G39700No description available.A06+View
BR01G03280No description available.A01-View
BR08G20270No description available.A08+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G04430No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00019G02830No description available.CM3.5_scaffold00019-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G00150No description available.scaffold_4-View
CRU_007G00580No description available.scaffold_7-View
CRU_007G05030No description available.scaffold_7-View
CRU_003G29220No description available.scaffold_3+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G13570No description available.scaffold_6+View
EG0009G11360No description available.scaffold_9+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G06590Peptidyl-prolyl cis-trans isomerase (PPIase) (putative)LG2+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM12G02790No description available.Gm12+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR02G19360No description available.Chr02+View
GR12G15310No description available.Chr12-View
GR08G03410No description available.Chr08+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G042700No description available.chr1+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07012G00440No description available.scaffold07012-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G117750peptidyl-prolyl cis-trans isomerasechr3+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G17870No description available.scaffold_8+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT09G13010No description available.Chr09+View
PT04G16880No description available.Chr04+View
PT05G24020No description available.Chr05+View
PT02G02150No description available.Chr02-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30131G03070No description available.30131+View
RC30170G05510No description available.30170+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G111170Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q9XF12_SOLTU)%3B contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type Peptidyl-prolyl cis-trans isomerasech01+View
SL10G054910Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q9XF12_SOLTU)%3B contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-typech10+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G048580Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q9XF12_SOLTU); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-typechr01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G06690No description available.scaffold_2-View
TC0002G06350No description available.scaffold_2-View
TC0002G06000No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G00280similar to AT4G38740|ROC1 (ROTAMASE CYP 1)ch4-1-View
TP7G32640similar to AT4G34870|ROC5 (ROTAMASE CYCLOPHILIN 5)ch7-5+View
TP7G37060similar to AT4G38740|ROC1 (ROTAMASE CYP 1)ch7-6+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G10690name=GSVIVG01009919001;chr18+View
VV03G04920name=GSVIVG01024047001;chr3+View


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Gene id
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Description
Chromosome
Strand