PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AT4G13850
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G23830	glycine-rich RNA-binding protein 4 glycine-rich RNA-binding protein 4 (GRP4); CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 2 (TAIR:AT4G13850.3); Has 39778 Blast hits to 39772 proteins in 2962 species: Archae - 777; Bacteria - 23781; Metazoa - 723; Fungi - 392; Plants - 1153; Viruses - 36; Other Eukaryotes - 12916 (source: NCBI BLink). encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.	3	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL7G30730	No description available.	scaffold_7	-	View

Amborella trichopoda

Gene id	Description	Chromosome	Strand	Multiplicon
ATR_00013G02490	No description available.	scaffold00013	+	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
BV3G10970	No description available.	Bvchr3.sca012	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00157G00500	No description available.	supercontig_157	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_003G23110	No description available.	scaffold_3	-	View
CRU_007G27390	No description available.	scaffold_7	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0008G00240	No description available.	scaffold_8	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV4G17100	Glycine-rich RNA-binding protein 2, mitochondrial (AtGRP2), Precursor (similar to)	LG4	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM11G36580	No description available.	Gm11	+	View
GM18G00480	No description available.	Gm18	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR05G02810	No description available.	Chr05	-	View
GR11G15330	No description available.	Chr11	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD09G014120	No description available.	9	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME02421G00820	No description available.	scaffold02421	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT3G084040	RNA-binding (RRM/RBD/RNP motif) family protein	chr3	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT17G05900	No description available.	Chr17	+	View
PT01G31980	No description available.	Chr01	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL09G092320	RNA binding protein-like protein (AHRD V1 **** Q3HVL3_SOLTU)%3B contains Interpro domain(s) IPR015465 RNA recognition motif%2C glycine rich protein	ch09	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST09G028850	RNA-binding motif, single-stranded-interacting protein 1 (AHRD V1 -* RBMS1_MOUSE); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein	chr09	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0004G20060	No description available.	scaffold_4	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP7G11680	similar to AT4G13850\|GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	ch7-4	+	View
TP3G21550	similar to AT3G23830\|GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)	ch3-2	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV05G07180	name=GSVIVG01021024001;	chr5	-	View