PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AT4G08160
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G10050	Encodes a putative glycosyl hydrolase family 10 protein (xylanase). glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1); Has 2595 Blast hits to 2245 proteins in 443 species: Archae - 10; Bacteria - 1438; Metazoa - 33; Fungi - 351; Plants - 403; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink). glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	1	+	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL6G30290	No description available.	scaffold_6	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_006G25790	No description available.	scaffold_6	-	View
CRU_001G09060	No description available.	scaffold_1	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00004G03730	No description available.	scaffold00004	+	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0006G17980	No description available.	scaffold_6	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV2G32310	Endo-1,4-beta-xylanase A (Xylanase A), Precursor (probable)	LG2	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD15G001310	No description available.	15	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME03299G00240	No description available.	scaffold03299	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_001G42180	No description available.	scaffold_1	+	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30170G00320	No description available.	30170	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL04G077190	Endo-1 4-beta-xylanase (AHRD V1 -* B6SW51_MAIZE)%3B contains Interpro domain(s) IPR013781 Glycoside hydrolase%2C subgroup%2C catalytic core	ch04	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST04G030080	Endo-1 4-beta-xylanase (AHRD V1 -* B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core	chr04	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0008G07830	No description available.	scaffold_8	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP1G08700	similar to AT1G10050\|glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	ch1-1	+	View
TP6G10020	similar to AT4G08160\|glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	ch6-3	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV18G05360	name=GSVIVG01009272001;	chr18	+	View