Expansion plot
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Functional clusters
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BLAST
WorkbenchAnchorpoints
- Gene id
- AT4G05420
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT4G21100 | damaged DNA binding protein 1B damaged DNA binding protein 1B (DDB1B); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.1); Has 1459 Blast hits to 1199 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 391; Plants - 235; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink). One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase. | 4 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL7G21610 | No description available. | scaffold_7 | + | View |
| AL6G37370 | No description available. | scaffold_6 | + | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR09G23450 | No description available. | A09 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_006G32100 | No description available. | scaffold_6 | + | View |
| CRU_007G19390 | No description available. | scaffold_7 | + | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST04G034080 | DNA damage-binding protein 1 (AHRD V1 ***- C0H989_SALSA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal | chr04 | - | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP7G19180 | similar to AT4G21100|DDB1B (Damaged DNA Binding Protein 1 B) | ch7-4 | - | View |
| TP6G03670 | similar to AT4G05420|DDB1A (DAMAGED DNA BINDING PROTEIN 1A) | ch6-1 | - | View |