Anchorpoints

Gene id
AT3G62410
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G47400CP12 domain-containing protein 1 CP12 domain-containing protein 1 (CP12-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of reductive pentose-phosphate cycle; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12 domain-containing protein 2 (TAIR:AT3G62410.1); Has 264 Blast hits to 264 proteins in 70 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle.2+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G35600No description available.scaffold_4+View
AL5G33530No description available.scaffold_5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G17400No description available.A07+View
BR05G00510No description available.A05-View
BR03G22990No description available.A03+View
BR09G41440No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G15030No description available.Bvchr5.sca025-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G09650No description available.Chr10-View
CL09G04770No description available.Chr9+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00026G02470No description available.CM3.5_scaffold00026+View
CM00031G03930No description available.CM3.5_scaffold00031+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00018G00400No description available.supercontig_18-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G27690No description available.scaffold_5+View
CRU_004G29000No description available.scaffold_4+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00001G06610No description available.scaffold00001+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G30070No description available.scaffold_11-View
EG0008G08750No description available.scaffold_8+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G34700Calvin cycle protein CP12 (similar to)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM19G40400No description available.Gm19-View
GM10G01610No description available.Gm10+View
GM02G01580No description available.Gm02+View
GM03G37800No description available.Gm03-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G13940No description available.Chr08+View
GR01G14430No description available.Chr01-View
GR07G12270No description available.Chr07+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07301G00350No description available.scaffold07301-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G109520calvin cycle protein CP12-1chr7-View
MT1G087030calvin cycle protein CP12-1chr1+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G19380calvin cycle protein CP12, putative, expressed3+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G27910No description available.scaffold_8+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G19610No description available.Chr02+View
PT14G12070No description available.Chr14+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30076G02190No description available.30076+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G009630CP12 (AHRD V1 ***- O24136_TOBAC)%3B contains Interpro domain(s) IPR003823 Protein of unknown function CP12ch06+View
SL01G079470CP12 (AHRD V1 ***- O24136_TOBAC)%3B contains Interpro domain(s) IPR003823 Protein of unknown function CP12ch01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST06G007930CP12 (AHRD V1 ***- O24136_TOBAC); contains Interpro domain(s) IPR003823 Protein of unknown function CP12chr06+View
ST01G023740CP12 (AHRD V1 ***- O24136_TOBAC); contains Interpro domain(s) IPR003823 Protein of unknown function CP12chr01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G31160No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G29340similar to AT2G47400|CP12-1ch4-6+View
TP5G01000similar to AT3G62410|CP12-2ch5-1-View


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Gene id
Species
Description
Chromosome
Strand